Table 1. Data content of rVarBase (as of September 15, 2015) and comparison of the current and previous versions.

 

Data type

rSNPBase

rVarBase

Variants

 

rSNPs*

22,846,898

87,345,304

 

rCNVs**

--

1,368,424

 

Annotation for novel variants

No

Yes

Regulatory features

 

Chromatin states

No

Yes

 

Regulatory elements

 

 

CpG islands

Yes

Yes

 

 

TF binding regions

Yes

Yse

 

 

 

Matched TFBS

No

Yes

 

 

Interactive chromatin region

Yes

Yse

 

 

lncRNA

No

Yes

 

 

miRNA

Yes

Yes

 

 

miRNA binding site

No

Yse

 

Target genes

56,869

82,640

Extended variants

 

LD-proxies of rSNPs (non-rSNPs)

2,281,874

1,626,737

 

Non-rSNPs inside rCNVs

--

21,797,660

Associated traits

 

Diseases(variant-disease pairs)

--

198,928

 

eQTLs (SNP-mRNA pairs)

2,428,727

4,201,218