Table 1.
Data content of rVarBase (as of September 15, 2015) and comparison of the
current and previous versions.
|
Data
type |
rSNPBase |
rVarBase |
|||||
|
Variants |
|||||||
|
|
rSNPs* |
22,846,898 |
87,345,304 |
||||
|
|
rCNVs** |
-- |
1,368,424 |
||||
|
|
Annotation
for novel variants |
No |
Yes |
||||
|
Regulatory
features |
|||||||
|
|
Chromatin
states |
No |
Yes |
||||
|
|
Regulatory
elements |
||||||
|
|
|
CpG
islands |
Yes |
Yes |
|||
|
|
|
TF
binding regions |
Yes |
Yse |
|||
|
|
|
|
Matched
TFBS |
No |
Yes |
||
|
|
|
Interactive
chromatin region |
Yes |
Yse |
|||
|
|
|
lncRNA |
No |
Yes |
|||
|
|
|
miRNA |
Yes |
Yes |
|||
|
|
|
miRNA
binding site |
No |
Yse |
|||
|
|
Target
genes |
56,869 |
82,640 |
||||
|
Extended
variants |
|||||||
|
|
LD-proxies
of rSNPs (non-rSNPs) |
2,281,874 |
1,626,737 |
||||
|
|
Non-rSNPs
inside rCNVs |
-- |
21,797,660 |
||||
|
Associated
traits |
|||||||
|
|
Diseases(variant-disease
pairs) |
-- |
198,928 |
||||
|
|
eQTLs
(SNP-mRNA pairs) |
2,428,727 |
4,201,218 |
||||