Variant report

Variant	esv1007152
Chromosome Location	chr10:119093939-119103178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:119093147..119095876-chr10:119096852..119099544,3	MCF-7	breast:
2	chr10:119091902..119094028-chr10:119134519..119136628,2	K562	blood:
3	chr10:119084311..119085948-chr10:119101623..119103833,2	K562	blood:
4	chr10:119093147..119095876-chr10:119096852..119099544,3	MCF-7	breast:
5	chr10:119097071..119098975-chr10:119105436..119107758,2	K562	blood:
6	chr10:119095928..119098353-chr10:119180711..119183510,2	K562	blood:
7	chr10:119094047..119095795-chr10:119096896..119099210,2	K562	blood:
8	chr10:119093017..119095795-chr10:119096896..119099742,2	K562	blood:
9	chr10:119093017..119095795-chr10:119096896..119099742,2	K562	blood:
10	chr10:119088241..119091090-chr10:119093377..119096117,2	MCF-7	breast:
11	chr10:119094047..119095795-chr10:119096896..119099210,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165650	chromatin interactions

Extended variants
information (count: 307 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183752517	chr10:119094062-119094063	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs11812488	chr10:119094063-119094064	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs188277251	chr10:119094088-119094089	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566210820	chr10:119094103-119094104	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535339175	chr10:119094110-119094111	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374876895	chr10:119094120-119094121	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs193284829	chr10:119094228-119094229	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558912622	chr10:119094316-119094317	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574690832	chr10:119094347-119094348	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570927257	chr10:119094365-119094366	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs577205490	chr10:119094411-119094412	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543650464	chr10:119094472-119094473	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555817523	chr10:119094486-119094487	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs576108867	chr10:119094525-119094526	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs77351657	chr10:119094537-119094538	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs185527892	chr10:119094553-119094554	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564887257	chr10:119094591-119094592	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs532219936	chr10:119094594-119094595	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs2490632	chr10:119094670-119094671	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs139682441	chr10:119094704-119094705	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs58653554	chr10:119094726-119094727	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs529898183	chr10:119095044-119095045	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs34395288	chr10:119095053-119095054	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs75538733	chr10:119095085-119095086	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117905699	chr10:119095101-119095102	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs532656777	chr10:119095143-119095144	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs188348265	chr10:119095156-119095157	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566068481	chr10:119095177-119095178	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534743088	chr10:119095206-119095207	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs554834031	chr10:119095235-119095236	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs367755782	chr10:119095278-119095279	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75154990	chr10:119095460-119095461	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs61865310	chr10:119095471-119095472	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs111776784	chr10:119095473-119095474	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs576013539	chr10:119095488-119095489	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs148546439	chr10:119095512-119095513	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs558413387	chr10:119095521-119095522	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs571995167	chr10:119095546-119095547	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs537836584	chr10:119095552-119095553	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs112495830	chr10:119095641-119095642	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs561144133	chr10:119095665-119095666	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs556103623	chr10:119095702-119095703	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs191299588	chr10:119095740-119095741	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs79131253	chr10:119095762-119095763	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs563510238	chr10:119095769-119095770	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs538705088	chr10:119095823-119095824	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs73407962	chr10:119095846-119095847	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs552638120	chr10:119095860-119095861	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs553887678	chr10:119095896-119095897	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs183492700	chr10:119095939-119095940	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apert syndrome	21572526	CNVD
Macular degeneration	22558131	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Muscular dystrophy	21149563	CNVD
Honadal dysgenesis	21048976	CNVD
Glioma	18556773	CNVD

Chromatin state (count:458 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
8	chr10:119064600-119098000	Weak transcription	HMEC	breast
9	chr10:119066800-119111600	Weak transcription	Colonic Mucosa	Colon
10	chr10:119069200-119094200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:119069400-119104400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:119069600-119095200	Weak transcription	Ovary	ovary
13	chr10:119070400-119094600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:119071600-119099200	Weak transcription	NH-A	brain
15	chr10:119071600-119106000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:119071800-119099200	Weak transcription	Hela-S3	cervix
17	chr10:119072000-119111200	Weak transcription	Aorta	Aorta
18	chr10:119072200-119095200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:119076200-119099800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:119076400-119104800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:119076600-119095000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:119078000-119101400	Weak transcription	NHDF-Ad	bronchial
23	chr10:119078200-119104400	Weak transcription	HSMM	muscle
24	chr10:119079000-119101800	Weak transcription	NHEK	skin
25	chr10:119079400-119099200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:119082200-119099800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:119082600-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:119083400-119104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:119083600-119098800	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:119085600-119102000	Weak transcription	Pancreas	Pancrea
32	chr10:119086000-119102000	Weak transcription	Gastric	stomach
33	chr10:119086200-119099200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:119086400-119097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:119086400-119099000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:119086800-119095200	Weak transcription	HepG2	liver
37	chr10:119086800-119098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:119086800-119099200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:119087000-119094400	Weak transcription	Primary T cells from cord blood	blood
40	chr10:119087000-119097800	Weak transcription	Fetal Kidney	kidney
41	chr10:119087000-119100600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:119087200-119094800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:119087600-119100000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:119087800-119097200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:119088000-119101400	Weak transcription	Stomach Mucosa	stomach
46	chr10:119088600-119100000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:119089000-119096800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:119089800-119102000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:119092400-119099400	Weak transcription	Fetal Heart	heart
50	chr10:119093000-119095800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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