Variant report
| Variant | esv1179700 |
|---|---|
| Chromosome Location | chr9:141026813-141026814 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr9:141026760-141026910 | A549 | lung: | n/a | n/a |
| 2 | CTCF | chr9:141026740-141026890 | GM12873 | blood: | n/a | n/a |
| 3 | CTCF | chr9:141026720-141026870 | HCFaa | heart: | n/a | n/a |
| 4 | CTCF | chr9:141026700-141026850 | GM12865 | blood: | n/a | n/a |
| 5 | CTCF | chr9:141026700-141026850 | HEK293 | kidney: | n/a | n/a |
| 6 | CTCF | chr9:141026740-141026890 | MCF-7 | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229926 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs71495310 | chr9:141026813-141026814 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 2 | rs372282637 | chr9:141026814-141026815 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Variant related diseases (count:19)
| Disease | PMID | Source |
|---|---|---|
| Leukemia | 17361228 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Cardiac fibroma | 18329553 | CNVD |
| Lung cancer | 19147751 | CNVD |
| Cervical cancer | 17311676 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
| Chordoma | 18071362 | CNVD |
| Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
| Sudden cardiac death | 19188705 | CNVD |
| Myoepithelioma | 18604193 | CNVD |
| Tuberous sclerosis | 19566914 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Acute lymphoblastic leukemia | 19100363 | CNVD |
| Mantle cell lymphoma | 19029149 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:140988200-141044600 | Weak transcription | Right Atrium | heart |
