Variant report

Variant	esv1646782
Chromosome Location	chr2:38874119-38874120
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:38825926..38832179-chr2:38868147..38876106,18	K562	blood:
2	chr2:38872329..38875260-chr2:38918256..38921155,2	K562	blood:
3	chr2:38872328..38874497-chr2:38976004..38978659,2	K562	blood:
4	chr2:38850061..38855322-chr2:38870938..38874508,5	K562	blood:

Variant related genes	Relation type
ENSG00000235586	chromatin interactions
ENSG00000143889	chromatin interactions
ENSG00000115875	chromatin interactions

Extended variants
information (count: 2 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79258523	chr2:38874119-38874120	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs67082593	chr2:38874120-38874121	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Colorectal cancer	16272173	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38870800-38877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:38870800-38881600	Weak transcription	Spleen	Spleen
3	chr2:38871200-38874400	Weak transcription	HepG2	liver
4	chr2:38871200-38880800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:38871600-38875000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:38871800-38875000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:38872000-38875000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:38872000-38875200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:38872200-38875000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr2:38872200-38875000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:38872200-38875000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:38872200-38875000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:38872200-38875000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:38872200-38875000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:38872200-38875000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr2:38872200-38875000	Weak transcription	Fetal Thymus	thymus
17	chr2:38872200-38875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr2:38872200-38875200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr2:38872200-38875200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:38872200-38875400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:38872400-38875000	Weak transcription	Dnd41	blood
22	chr2:38873200-38879600	Enhancers	K562	blood
23	chr2:38873400-38875000	Weak transcription	Hela-S3	cervix
24	chr2:38873400-38875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:38873400-38875200	Weak transcription	Thymus	Thymus
26	chr2:38873400-38878400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:38873800-38874600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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