Variant report

Variant	esv1814028
Chromosome Location	chr9:15159378-15167943
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15163944..15166887-chr9:15170115..15173415,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC39B-1	chr9:15163622-15166031	NONHSAT130260

Extended variants
information (count: 390 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:390 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9298726	chr9:15159378-15159379	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs560929362	chr9:15159430-15159431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs577142964	chr9:15159431-15159432	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs549833179	chr9:15159485-15159486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs370350540	chr9:15159542-15159543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs182805999	chr9:15159562-15159563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs7038339	chr9:15159566-15159567	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs368611659	chr9:15159572-15159573	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs534055025	chr9:15159574-15159575	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs547675873	chr9:15159596-15159597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs145188374	chr9:15159599-15159600	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs372336489	chr9:15159613-15159614	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10453186	chr9:15159624-15159625	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs188967496	chr9:15159625-15159626	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs556253126	chr9:15159630-15159631	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10453187	chr9:15159639-15159640	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs545233951	chr9:15159640-15159641	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs10453188	chr9:15159666-15159667	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539844895	chr9:15159680-15159681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374388065	chr9:15159687-15159688	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs193232995	chr9:15159688-15159689	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs184386563	chr9:15159691-15159692	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs188823009	chr9:15159702-15159703	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs549874462	chr9:15159744-15159745	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs148822370	chr9:15159771-15159772	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs532499134	chr9:15159804-15159805	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs386732988	chr9:15159807-15159808	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs145386646	chr9:15159808-15159809	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs191694432	chr9:15159809-15159810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs183832597	chr9:15159831-15159832	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs112952817	chr9:15159835-15159836	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs932713	chr9:15159849-15159850	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs537881879	chr9:15159876-15159877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs189797627	chr9:15159889-15159890	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs181051667	chr9:15159902-15159903	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs386732989	chr9:15159903-15159904	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs932712	chr9:15159928-15159929	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs77833282	chr9:15159935-15159936	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs116321022	chr9:15159946-15159947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs74521895	chr9:15159963-15159964	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs28540609	chr9:15159970-15159971	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs554404920	chr9:15160009-15160010	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs532095199	chr9:15160040-15160041	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs369306199	chr9:15160068-15160069	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs137914043	chr9:15160090-15160091	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185986922	chr9:15160151-15160152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs142144572	chr9:15160182-15160183	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs199665114	chr9:15160207-15160208	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs145762510	chr9:15160208-15160209	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs559918586	chr9:15160236-15160237	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
early-passage human iPS cells	21368824	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15146800-15160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:15155400-15161400	Enhancers	Osteobl	bone
3	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:15156400-15171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:15156800-15162200	Weak transcription	Fetal Brain Female	brain
8	chr9:15156800-15169000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:15156800-15170200	Weak transcription	Esophagus	oesophagus
10	chr9:15156800-15170800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:15157600-15162600	Weak transcription	Fetal Brain Male	brain
17	chr9:15158000-15160800	Weak transcription	Ovary	ovary
18	chr9:15158400-15159800	Enhancers	HUVEC	blood vessel
19	chr9:15158400-15160000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:15158600-15168000	Weak transcription	Liver	Liver
21	chr9:15158800-15161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:15158800-15162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:15158800-15168000	Weak transcription	Aorta	Aorta
24	chr9:15159000-15159400	Enhancers	NHEK	skin
25	chr9:15159000-15160000	Weak transcription	NH-A	brain
26	chr9:15159000-15166600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:15159000-15170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:15159000-15177000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:15159000-15211200	Weak transcription	HMEC	breast
30	chr9:15159200-15168000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:15159200-15169000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:15159800-15160200	Weak transcription	HUVEC	blood vessel
34	chr9:15160000-15161400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:15160200-15161200	Enhancers	HUVEC	blood vessel
36	chr9:15160200-15162800	Enhancers	NHLF	lung
37	chr9:15160400-15161400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:15160600-15161200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:15160800-15161200	Enhancers	Ovary	ovary
40	chr9:15161000-15169000	Weak transcription	Fetal Intestine Large	intestine
41	chr9:15161200-15161800	Weak transcription	Ovary	ovary
42	chr9:15161200-15162000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:15161200-15181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:15161400-15162800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:15161800-15162000	Enhancers	Fetal Intestine Small	intestine
46	chr9:15161800-15162000	Enhancers	Ovary	ovary
47	chr9:15161800-15163400	Enhancers	Fetal Stomach	stomach
48	chr9:15161800-15165800	Weak transcription	Primary T cells from cord blood	blood
49	chr9:15162000-15170200	Weak transcription	Ovary	ovary
50	chr9:15162000-15181600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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