Variant report

Variant	esv1836506
Chromosome Location	chr6:101054054-101094554
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:101060989..101063700-chr6:101064166..101066010,2	K562	blood:
2	chr6:101060989..101063700-chr6:101064166..101066010,2	K562	blood:
3	chr6:101041802..101044393-chr6:101056918..101059370,2	K562	blood:
4	chr6:101067158..101069268-chr6:101070159..101073076,2	K562	blood:
5	chr6:101081950..101083969-chr6:101086738..101088997,2	MCF-7	breast:
6	chr6:101057024..101059544-chr6:101398692..101400539,2	K562	blood:
7	chr6:101073440..101076010-chr6:101092946..101094506,2	K562	blood:
8	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:
9	chr6:101067158..101069268-chr6:101070159..101073076,2	K562	blood:
10	chr6:101066085..101068490-chr6:101073516..101076131,2	K562	blood:
11	chr6:101081950..101083969-chr6:101086738..101088997,2	MCF-7	breast:
12	chr6:101073440..101076010-chr6:101092946..101094506,2	K562	blood:
13	chr20:56283793..56286446-chr6:101062328..101064886,2	MCF-7	breast:
14	chr6:101066085..101068490-chr6:101073516..101076131,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIK2-6	chr6:101080704-101080933	uc_202_+
2	lnc-SIM1-3	chr6:101080704-101080933	uc_202_-

No data

Variant related genes	Relation type
ENSG00000124225	chromatin interactions

Extended variants
information (count: 1516 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:1516 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9485222	chr6:101054054-101054055	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs540276909	chr6:101054090-101054091	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541738157	chr6:101054094-101054095	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs554006842	chr6:101054135-101054136	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs150472708	chr6:101054193-101054194	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545945093	chr6:101054201-101054202	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563844241	chr6:101054223-101054224	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368700568	chr6:101054243-101054244	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182874034	chr6:101054272-101054273	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543052439	chr6:101054273-101054274	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs115239550	chr6:101054277-101054278	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs529617592	chr6:101054334-101054335	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs112887397	chr6:101054363-101054364	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566326657	chr6:101054382-101054383	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs533370175	chr6:101054386-101054387	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191381648	chr6:101054485-101054486	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570204800	chr6:101054502-101054503	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537527932	chr6:101054518-101054519	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9497881	chr6:101054522-101054523	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs182314768	chr6:101054531-101054532	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs145417765	chr6:101054552-101054553	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374644945	chr6:101054578-101054579	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs187731781	chr6:101054580-101054581	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs368149651	chr6:101054588-101054589	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200528298	chr6:101054590-101054591	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192574795	chr6:101054594-101054595	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs557516971	chr6:101054595-101054596	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75836891	chr6:101054606-101054607	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201404914	chr6:101054636-101054637	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112466876	chr6:101054640-101054641	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs147541766	chr6:101054644-101054645	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371325173	chr6:101054677-101054678	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139820890	chr6:101054695-101054696	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs41285887	chr6:101054745-101054746	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs561416702	chr6:101054746-101054747	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375896704	chr6:101054781-101054782	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528896475	chr6:101054793-101054794	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199638129	chr6:101054807-101054808	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531438397	chr6:101054829-101054830	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs368906997	chr6:101054848-101054849	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201240177	chr6:101054886-101054887	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs372627157	chr6:101054887-101054888	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376060065	chr6:101054907-101054908	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200718453	chr6:101054930-101054931	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552037930	chr6:101054994-101054995	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570241335	chr6:101054997-101054998	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs395521	chr6:101054999-101055000	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs13215740	chr6:101055003-101055004	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149130996	chr6:101055004-101055005	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185182789	chr6:101055030-101055031	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17170743	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Myelofibrosis	22110671	CNVD
Obesity	21045960	CNVD
Liver carcinoma	19366792	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:841 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101009000-101065600	Weak transcription	NHEK	skin
2	chr6:101011000-101080800	Weak transcription	HepG2	liver
3	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
5	chr6:101017800-101069800	Weak transcription	Lung	lung
6	chr6:101020400-101066200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:101027800-101070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:101028000-101068800	Weak transcription	Psoas Muscle	Psoas
10	chr6:101030200-101070000	Weak transcription	Aorta	Aorta
11	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
12	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:101032800-101065600	Weak transcription	Colonic Mucosa	Colon
16	chr6:101033600-101057600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:101033800-101065400	Weak transcription	Hela-S3	cervix
18	chr6:101034000-101085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:101034400-101066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:101034400-101084200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
22	chr6:101034600-101055000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:101035400-101065600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:101035800-101070000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:101036000-101064600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:101036000-101075200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:101036000-101084800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:101036200-101073000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:101036200-101084000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:101037400-101110600	Weak transcription	K562	blood
31	chr6:101037600-101056400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:101037600-101057000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:101037600-101071200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:101037600-101072200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:101038000-101073200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:101038000-101084200	Weak transcription	Fetal Thymus	thymus
38	chr6:101038600-101065400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:101039200-101071200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:101041800-101065600	Weak transcription	HSMMtube	muscle
41	chr6:101042000-101055200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:101042200-101055000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:101042400-101055200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:101043800-101070200	Weak transcription	Spleen	Spleen
45	chr6:101044800-101055000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:101046000-101055000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:101048600-101065600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:101049000-101065400	Weak transcription	Ovary	ovary
49	chr6:101049000-101066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:101049000-101066200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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