Variant report

Variant	esv2461343
Chromosome Location	chr1:71148191-71149670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:71146129..71148659-chr1:71148897..71151242,2	K562	blood:
2	chr1:71140625..71143147-chr1:71147219..71151401,4	K562	blood:
3	chr1:71146129..71148659-chr1:71148897..71151242,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113542435	chr1:71148248-71148249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562888831	chr1:71148279-71148280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531723190	chr1:71148290-71148291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112724052	chr1:71148314-71148315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2992054	chr1:71148359-71148360	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs11209675	chr1:71148362-71148363	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs549512665	chr1:71148390-71148391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2992053	chr1:71148414-71148415	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs567865585	chr1:71148420-71148421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs192295364	chr1:71148423-71148424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553881250	chr1:71148449-71148450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs140019723	chr1:71148558-71148559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567119573	chr1:71148612-71148613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538608748	chr1:71148700-71148701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372741360	chr1:71148721-71148722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534386129	chr1:71148753-71148754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558292109	chr1:71148756-71148757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565606957	chr1:71148757-71148758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs534615451	chr1:71148781-71148782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs34321350	chr1:71148782-71148783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs397725409	chr1:71148791-71148792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs554296662	chr1:71148841-71148842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574289973	chr1:71148844-71148845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs536368552	chr1:71148853-71148854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs377586246	chr1:71148854-71148855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs12736348	chr1:71148934-71148935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs12736351	chr1:71148948-71148949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555890735	chr1:71148969-71148970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183663987	chr1:71148989-71148990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149066627	chr1:71148994-71148995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199601408	chr1:71149046-71149047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563968304	chr1:71149047-71149048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375943636	chr1:71149048-71149049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs187920987	chr1:71149079-71149080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192218923	chr1:71149105-71149106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs183712965	chr1:71149189-71149190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11209676	chr1:71149266-71149267	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs149427471	chr1:71149288-71149289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144822933	chr1:71149293-71149294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs530305679	chr1:71149294-71149295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550137053	chr1:71149316-71149317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148617862	chr1:71149348-71149349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187311158	chr1:71149370-71149371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2782808	chr1:71149377-71149378	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs375405564	chr1:71149385-71149386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11209678	chr1:71149407-71149408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs534364684	chr1:71149411-71149412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs550853198	chr1:71149430-71149431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs561252415	chr1:71149512-71149513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548071938	chr1:71149575-71149576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71146400-71150600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:71146600-71149800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links