Variant report

Variant	esv2753382
Chromosome Location	chrX:55930768-56851953
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6001)
CpG islands
(count:2689)
Chromatin interactive
region (count:88)
LncRNA
region (count:42)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:6001 , 50 per page) page: 1 2 3 4 5 6 7 ... 121

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chrX:56589498-56590094	K562	blood:	n/a	n/a
2	ARID3A	chrX:56593079-56593262	HepG2	liver:	n/a	n/a
3	ARID3A	chrX:56589570-56590129	HepG2	liver:	n/a	n/a
4	ARID3A	chrX:56752993-56753362	K562	blood:	n/a	n/a
5	ATF2	chrX:56790827-56791243	GM12878	blood:	n/a	n/a
6	ATF2	chrX:56790757-56791316	GM12878	blood:	n/a	n/a
7	ATF2	chrX:56790124-56790541	GM12878	blood:	n/a	n/a
8	ATF2	chrX:55945674-55946436	GM12878	blood:	n/a	n/a
9	ATF2	chrX:56295270-56295753	GM12878	blood:	n/a	n/a
10	ATF2	chrX:55945671-55946245	GM12878	blood:	n/a	n/a
11	ATF3	chrX:56771415-56771798	HCT-116	colon:	n/a	n/a
12	ATF3	chrX:56771375-56771803	HCT-116	colon:	n/a	n/a
13	BACH1	chrX:56152481-56152716	H1-hESC	embryonic stem cell:	n/a	chrX:56152563-56152577
14	BACH1	chrX:55945985-55946178	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chrX:56393670-56393714	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chrX:56846929-56847120	K562	blood:	n/a	n/a
17	BACH1	chrX:56596195-56596448	K562	blood:	n/a	n/a
18	BACH1	chrX:56258793-56259051	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chrX:56534655-56534827	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chrX:56055843-56055960	H1-hESC	embryonic stem cell:	n/a	n/a
21	BATF	chrX:55934725-55935034	GM12878	blood:	n/a	n/a
22	BATF	chrX:56408679-56409026	GM12878	blood:	n/a	chrX:56408862-56408873
23	BATF	chrX:55945820-55946210	GM12878	blood:	n/a	n/a
24	BATF	chrX:56794479-56795154	GM12878	blood:	n/a	n/a
25	BATF	chrX:56788750-56789058	GM12878	blood:	n/a	n/a
26	BATF	chrX:56590726-56591085	GM12878	blood:	n/a	n/a
27	BATF	chrX:56799881-56800556	GM12878	blood:	n/a	n/a
28	BATF	chrX:56843625-56843859	GM12878	blood:	n/a	n/a
29	BATF	chrX:56839721-56840063	GM12878	blood:	n/a	n/a
30	BATF	chrX:56805573-56805799	GM12878	blood:	n/a	n/a
31	BATF	chrX:56804693-56805278	GM12878	blood:	n/a	n/a
32	BATF	chrX:56408742-56408920	GM12878	blood:	n/a	chrX:56408862-56408873
33	BATF	chrX:56799291-56799876	GM12878	blood:	n/a	n/a
34	BATF	chrX:56794004-56794474	GM12878	blood:	n/a	n/a
35	BATF	chrX:56295315-56295669	GM12878	blood:	n/a	n/a
36	BATF	chrX:55945736-55946611	GM12878	blood:	n/a	n/a
37	BATF	chrX:56800171-56800397	GM12878	blood:	n/a	n/a
38	BATF	chrX:56794060-56794375	GM12878	blood:	n/a	n/a
39	BATF	chrX:56794769-56794995	GM12878	blood:	n/a	n/a
40	BATF	chrX:56022733-56023011	GM12878	blood:	n/a	n/a
41	BATF	chrX:56799455-56799777	GM12878	blood:	n/a	n/a
42	BATF	chrX:56805283-56805958	GM12878	blood:	n/a	n/a
43	BATF	chrX:56804857-56805179	GM12878	blood:	n/a	n/a
44	BATF	chrX:56643166-56643363	GM12878	blood:	n/a	n/a
45	BATF	chrX:56022730-56022972	GM12878	blood:	n/a	n/a
46	BATF	chrX:56295292-56295609	GM12878	blood:	n/a	n/a
47	BCL11A	chrX:56051084-56051360	GM12878	blood:	n/a	n/a
48	BCL11A	chrX:56799196-56800628	GM12878	blood:	n/a	chrX:56800208-56800217 chrX:56800067-56800080 chrX:56799267-56799280
49	BCL11A	chrX:56793982-56795226	GM12878	blood:	n/a	chrX:56794806-56794815 chrX:56794665-56794678
50	BCL11A	chrX:56794463-56795166	GM12878	blood:	n/a	chrX:56794806-56794815 chrX:56794665-56794678

(count:2689 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:56259094-56259144	SKMC	muscle:	n/a
2	chrX:56259243-56259293	HepG2	liver:	n/a
3	chrX:56258812-56258862	GM12891	blood:	n/a
4	chrX:56590113-56590163	H1-hESC	embryonic stem cell:	embryo
5	chrX:55934874-55934924	GM12892	blood:	n/a
6	chrX:56259094-56259144	SKMC	muscle:	n/a
7	chrX:56259243-56259293	HepG2	liver:	n/a
8	chrX:56258812-56258862	GM12891	blood:	n/a
9	chrX:56590113-56590163	H1-hESC	embryonic stem cell:	embryo
10	chrX:55934874-55934924	GM12892	blood:	n/a
11	chrX:56764796-56764846	AG09319	gingival:	n/a
12	chrX:56756686-56756736	HCF	heart:	n/a
13	chrX:56258387-56258437	BJ	skin:	n/a
14	chrX:56258900-56258950	GM19239	blood:	n/a
15	chrX:56754534-56754584	GM12878	blood:	n/a
16	chrX:56590113-56590163	HCM	heart:	n/a
17	chrX:56589792-56589842	HCPEpiC	choroid plexus:	n/a
18	chrX:56258695-56258745	HepG2	liver:	n/a
19	chrX:55934874-55934924	HRPEpiC	eye:	n/a
20	chrX:56258900-56258950	RPTEC	kidney:	n/a
21	chrX:56310955-56311005	ECC-1	luminal epithelium:	n/a
22	chrX:56258973-56259023	NT2-D1	testis:	n/a
23	chrX:55935143-55935193	NB4	blood:	n/a
24	chrX:55934670-55934720	HNPCEpiC	eye:	n/a
25	chrX:56258900-56258950	GM12892	blood:	n/a
26	chrX:56258579-56258629	HL-60	blood:	n/a
27	chrX:56590362-56590412	RPTEC	kidney:	n/a
28	chrX:56589951-56590001	HEEpiC	esophagus:	n/a
29	chrX:56259094-56259144	AG09309	skin:	n/a
30	chrX:55934800-55934850	CMK	blood:	n/a
31	chrX:55935143-55935193	ECC-1	luminal epithelium:	n/a
32	chrX:56258113-56258163	NH-A	brain:	n/a
33	chrX:56590386-56590436	NT2-D1	testis:	n/a
34	chrX:56258193-56258243	BE2_C	brain:	n/a
35	chrX:56258440-56258490	HRPEpiC	eye:	n/a
36	chrX:55934874-55934924	HIPEpiC	eye:	n/a
37	chrX:56258812-56258862	HEEpiC	esophagus:	n/a
38	chrX:56259373-56259423	HRE	kidney:	n/a
39	chrX:56755717-56755767	AG04449	skin:	fetal
40	chrX:56258808-56258858	HAEpiC	amniotic membrane:	n/a
41	chrX:56590537-56590587	U87	brain:	n/a
42	chrX:56589949-56589999	PANC-1	pancreas:	n/a
43	chrX:56259243-56259293	HCPEpiC	choroid plexus:	n/a
44	chrX:56590513-56590563	HCPEpiC	choroid plexus:	n/a
45	chrX:56589792-56589842	HRPEpiC	eye:	n/a
46	chrX:56259094-56259144	NHDF-neo	bronchial:	n/a
47	chrX:56589918-56589968	AoSMC	blood vessel:	n/a
48	chrX:56589946-56589996	AG10803	skin:	n/a
49	chrX:55934670-55934720	AG10803	skin:	n/a
50	chrX:56258113-56258163	Hela-S3	cervix:	n/a

(count:88 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chrX:55828126..55828902-chrX:56274429..56275320,3	MCF-7	breast:
2	chrX:56307984..56308796-chrX:56488568..56489439,3	MCF-7	breast:
3	chrX:56066547..56068875-chrX:56132581..56134358,2	MCF-7	breast:
4	chrX:56593306..56595130-chrX:56601752..56604305,2	K562	blood:
5	chrX:56814414..56817142-chrX:56827213..56829946,2	MCF-7	breast:
6	chrX:56308372..56311065-chrX:56311411..56313857,2	MCF-7	breast:
7	chrX:56816463..56818432-chrX:56827430..56829351,2	MCF-7	breast:
8	chrX:56790021..56792634-chrX:56811164..56813731,2	MCF-7	breast:
9	chrX:56488880..56491421-chrX:56754271..56756737,2	MCF-7	breast:
10	chrX:56839755..56841638-chrX:56845784..56848486,2	K562	blood:
11	chrX:56132970..56134642-chrX:56144069..56145604,2	MCF-7	breast:
12	chrX:56755952..56758658-chrX:56787740..56790221,2	MCF-7	breast:
13	chrX:56806832..56808536-chrX:56810379..56813330,2	MCF-7	breast:
14	chrX:56830015..56830949-chrX:57004313..57005248,9	MCF-7	breast:
15	chr11:93474405..93474909-chrX:56589618..56590518,2	Hela-S3	cervix:
16	chrX:56309340..56311634-chrX:56589348..56591185,2	MCF-7	breast:
17	chrX:56820591..56822827-chrX:56824334..56826679,2	MCF-7	breast:
18	chrX:56816736..56818611-chrX:56825316..56827137,2	MCF-7	breast:
19	chrX:56580407..56582140-chrX:56590600..56592126,2	K562	blood:
20	chrX:56839314..56842023-chrX:57019639..57021323,2	MCF-7	breast:
21	chrX:56816463..56818432-chrX:56827430..56829351,2	MCF-7	breast:
22	chrX:56595142..56598529-chrX:56599430..56604121,4	K562	blood:
23	chrX:56790542..56791292-chrX:57182607..57183519,2	MCF-7	breast:
24	chrX:56809606..56814418-chrX:56815131..56818953,4	MCF-7	breast:
25	chrX:56047193..56049928-chrX:56052075..56053708,2	MCF-7	breast:
26	chrX:56581292..56583296-chrX:56585105..56587340,2	K562	blood:
27	chrX:55743259..55745403-chrX:56589658..56591573,2	MCF-7	breast:
28	chrX:56260197..56260956-chrX:56274204..56275178,2	MCF-7	breast:
29	chrX:56488558..56489404-chrX:56753028..56753703,4	MCF-7	breast:
30	chrX:56754417..56757216-chrX:56757629..56759617,2	MCF-7	breast:
31	chrX:56850607..56853538-chrX:57149099..57151794,2	K562	blood:
32	chrX:56582792..56586142-chrX:56588656..56592207,5	MCF-7	breast:
33	chrX:56820104..56822444-chrX:56825427..56828204,2	MCF-7	breast:
34	chrX:56560010..56562165-chrX:56589519..56591706,2	K562	blood:
35	chrX:56829971..56830601-chrX:57001746..57002383,2	MCF-7	breast:
36	chrX:56593306..56595130-chrX:56601752..56604305,2	K562	blood:
37	chrX:56583300..56586802-chrX:56587902..56592521,5	K562	blood:
38	chrX:56595436..56598724-chrX:56598981..56601324,4	K562	blood:
39	chrX:56809606..56814418-chrX:56815131..56818953,4	MCF-7	breast:
40	chr16:3313684..3314490-chrX:56589920..56590436,2	Hela-S3	cervix:
41	chrX:56814414..56817142-chrX:56827213..56829946,2	MCF-7	breast:
42	chrX:56047193..56049928-chrX:56052075..56053708,2	MCF-7	breast:
43	chrX:56815404..56816431-chrX:57001867..57002525,3	MCF-7	breast:
44	chrX:56595142..56598529-chrX:56599430..56604121,4	K562	blood:
45	chrX:56472581..56475344-chrX:56478387..56480442,2	K562	blood:
46	chrX:56820591..56822827-chrX:56824334..56826679,2	MCF-7	breast:
47	chrX:56308361..56308892-chrX:56752872..56753378,2	K562	blood:
48	chrX:56581292..56583296-chrX:56585105..56587340,2	K562	blood:
49	chrX:56806832..56808536-chrX:56810379..56813330,2	MCF-7	breast:
50	chrX:56820104..56822444-chrX:56825427..56828204,2	MCF-7	breast:

(count:42 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353698.1-1	chrX:56012432-56012657	NONHSAT137261
2	lnc-KLF8-2	chrX:56312985-56315265	NONHSAT137266
3	lnc-SPIN3-5	chrX:56312110-56312246	NONHSAT137265
4	lnc-SPIN3-3	chrX:56789313-56789333	NONHSAT137276
5	lnc-SPIN3-2	chrX:56825775-56826193	NONHSAT137277
6	lnc-KLF8-3	chrX:56333922-56334235	l_3919_chrX:56333921-56342490_thyroid
7	lnc-AL353698.1-3	chrX:55951281-55951958	ucscGeneNc_uc010nkf_1
8	lnc-AL353698.1-1	chrX:55981740-55982453	NONHSAT137261
9	lnc-AL353698.1-3	chrX:56058003-56058120	ucscGeneNc_uc010nkf_1
10	lnc-SPIN3-3	chrX:56778876-56779216	NONHSAT137276
11	lnc-AL353698.1-1	chrX:56046279-56046647	NONHSAT137261
12	lnc-SPIN3-2	chrX:56826891-56827336	NONHSAT137277
13	lnc-KLF8-1	chrX:56316470-56317510	XLOC_007993
14	lnc-UBQLN2-4	chrX:56759851-56760504	NONHSAT137273
15	lnc-UBQLN2-1	chrX:56650302-56650891	ENSG00000230105
16	lnc-SPIN3-2	chrX:56823800-56824231	NONHSAT137277
17	lnc-KLF8-3	chrX:56342401-56342490	l_3919_chrX:56333921-56342490_thyroid
18	lnc-SPIN3-3	chrX:56790854-56790965	NONHSAT137276
19	lnc-KLF8-1	chrX:56325676-56325981	XLOC_007993
20	lnc-AL353698.1-1	chrX:56231406-56231479	XLOC_007992
21	lnc-AL353698.1-2	chrX:55934556-55935233	ENSG00000227486.1
22	lnc-AL353698.1-1	chrX:56098009-56098241	XLOC_007992
23	lnc-SPIN3-2	chrX:56808145-56808617	NONHSAT137277
24	lnc-SPIN3-2	chrX:56815479-56815983	NONHSAT137277
25	lnc-UBQLN2-3	chrX:56667027-56667616	NONHSAT137269
26	lnc-AL353698.1-1	chrX:55976245-55977352	NONHSAT137261
27	lnc-UBQLN2-1	chrX:56644824-56644946	ENSG00000230105
28	lnc-UBQLN2-6	chrX:56762139-56762989	NONHSAT137275
29	lnc-UBQLN2-5	chrX:56760584-56761001	NONHSAT137274
30	lnc-AL353698.1-1	chrX:56231406-56231526	NONHSAT137261
31	lnc-UBQLN2-3	chrX:56661549-56661671	NONHSAT137269
32	lnc-SPIN3-4	chrX:56763221-56764017	NR_002308
33	lnc-AL353698.1-1	chrX:56072362-56072837	NONHSAT137261
34	lnc-UBQLN2-7	chrX:56775221-56775357	ucscGeneNc_uc004dut_2
35	lnc-SPIN3-5	chrX:56311188-56311820	NONHSAT137265
36	lnc-AL353698.1-2	chrX:56041278-56041606	ENSG00000227486.1
37	lnc-AL353698.1-1	chrX:55937880-55938503	NONHSAT137261
38	lnc-SPIN3-2	chrX:56808673-56808686	NONHSAT137277
39	lnc-UBQLN2-7	chrX:56772443-56772747	ucscGeneNc_uc004dut_2
40	lnc-SPIN3-3	chrX:56788470-56788737	NONHSAT137276
41	lnc-AL353698.1-1	chrX:56041278-56041396	NONHSAT137261
42	lnc-AL353698.1-1	chrX:56178906-56179017	NONHSAT137261

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	UBQLN2	hsa-miR-155-5p	chrX:56593242-56593263
2	UBQLN2	hsa-miR-155-5p	chrX:56593322-56593344

Variant related genes	Relation type
ENSG00000227486	TF binding region
RPL23AP83	TF binding region
UQCRBP1	TF binding region
UBQLN2	TF binding region
ENSG00000204272	TF binding region
ENSG00000233889	TF binding region
KLF8	TF binding region
ENSG00000230105	TF binding region
ENSG00000252961	TF binding region
ENSG00000214745	TF binding region
ENSG00000227486	CpG island
RPL23AP83	CpG island
UQCRBP1	CpG island
UBQLN2	CpG island
ENSG00000204272	CpG island
ENSG00000233889	CpG island
KLF8	CpG island
ENSG00000230105	CpG island
ENSG00000252961	CpG island
ENSG00000214745	CpG island
ENSG00000100796	chromatin interactions
ENSG00000083750	chromatin interactions
ENSG00000229582	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000227486	chromatin interactions
ENSG00000204272	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000157483	chromatin interactions
ENSG00000188021	chromatin interactions
ENSG00000006194	chromatin interactions
ENSG00000104447	chromatin interactions
ENSG00000157470	chromatin interactions
ALDH4A1	miRNA target sites

Extended variants
information (count: 8740 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:8740 , 50 per page) page: 1 2 3 4 5 6 7 ... 175

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs5960112	chrX:55930768-55930769	ZNF genes & repeats	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs371920867	chrX:55930832-55930833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs183434083	chrX:55930836-55930837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs188094107	chrX:55930896-55930897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs191901894	chrX:55930914-55930915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs558796111	chrX:55930922-55930923	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs183762364	chrX:55931021-55931022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs138115030	chrX:55931076-55931077	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs186902364	chrX:55931084-55931085	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs192470590	chrX:55931418-55931419	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs185545683	chrX:55931456-55931457	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs7064903	chrX:55931501-55931502	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs34365561	chrX:55931617-55931618	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs372639162	chrX:55931710-55931711	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs57673580	chrX:55931732-55931733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs190470485	chrX:55931905-55931906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs181636840	chrX:55931982-55931983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs142097920	chrX:55931983-55931984	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs185336248	chrX:55931985-55931986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs188535169	chrX:55932111-55932112	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs73622954	chrX:55932181-55932182	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs139588164	chrX:55932339-55932340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200663770	chrX:55932365-55932366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181295972	chrX:55932398-55932399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375954370	chrX:55932538-55932539	Weak transcription	TF binding region	2 gene(s)	Overlapped CNVs	n/a
26	rs12834583	chrX:55932569-55932570	Weak transcription	TF binding region	2 gene(s)	Overlapped CNVs	n/a
27	rs73622955	chrX:55932575-55932576	Weak transcription	TF binding region	2 gene(s)	Overlapped CNVs	n/a
28	rs73622956	chrX:55932738-55932739	Weak transcription Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
29	rs185030510	chrX:55932860-55932861	Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
30	rs188021142	chrX:55932947-55932948	Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
31	rs369724367	chrX:55933011-55933012	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs60270467	chrX:55933162-55933163	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs180934272	chrX:55933206-55933207	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs535490239	chrX:55933308-55933309	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs139936606	chrX:55933471-55933472	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs149853978	chrX:55933574-55933575	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs187193682	chrX:55933575-55933576	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs145795559	chrX:55933612-55933613	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs191985124	chrX:55933846-55933847	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs371791327	chrX:55933852-55933853	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs148986575	chrX:55933874-55933875	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs145825503	chrX:55933929-55933930	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
43	rs62627886	chrX:55934007-55934008	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
44	rs575627010	chrX:55934071-55934072	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
45	rs12013247	chrX:55934118-55934119	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	Overlapped CNVs	n/a
46	rs183615950	chrX:55934490-55934491	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
47	rs186958975	chrX:55934494-55934495	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
48	rs141318125	chrX:55934545-55934546	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
49	rs369109369	chrX:55934591-55934592	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
50	rs5960531	chrX:55934687-55934688	Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Cancer	21637783	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Cancer	16751803	CNVD
Intellectual disability	23615299	CNVD
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute myeloid leukemia	21251322	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Cancer	20164919	CNVD
Premature ovarian failure	20952765	CNVD
Thyroid cancer	19087340	CNVD
lymphocytic leukemia	21291569	CNVD
Cervical cancer	21062161	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	19835627	CNVD
Mental retardation	21735175	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Mental retardation	20877625	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Alcoholism	21790672	CNVD

Chromatin state (count:4854 , 50 per page) page: 1 2 3 4 5 6 7 ... 98

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55930200-55932200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:55932200-55933600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:55932600-55932800	Enhancers	GM12878-XiMat	blood
4	chrX:55932800-55933000	Flanking Active TSS	GM12878-XiMat	blood
5	chrX:55933000-55933600	Active TSS	GM12878-XiMat	blood
6	chrX:55933600-55933800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
7	chrX:55933600-55933800	Enhancers	Placenta Amnion	Placenta Amnion
8	chrX:55933600-55933800	Enhancers	GM12878-XiMat	blood
9	chrX:55933600-55934400	Enhancers	Primary B cells from peripheral blood	blood
10	chrX:55933600-55936400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chrX:55933600-55939000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chrX:55933800-55934000	Enhancers	H1 Cell Line	embryonic stem cell
13	chrX:55933800-55934000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chrX:55933800-55934000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chrX:55933800-55934000	Flanking Active TSS	GM12878-XiMat	blood
16	chrX:55933800-55934200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chrX:55933800-55934200	Enhancers	Fetal Intestine Small	intestine
18	chrX:55933800-55936200	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chrX:55934000-55934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chrX:55934000-55934200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chrX:55934000-55934200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chrX:55934000-55934200	Enhancers	Fetal Intestine Large	intestine
23	chrX:55934000-55934200	Enhancers	Fetal Thymus	thymus
24	chrX:55934000-55934400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
25	chrX:55934000-55934400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chrX:55934000-55934400	Enhancers	Brain Cingulate Gyrus	brain
27	chrX:55934000-55934400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chrX:55934000-55936000	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chrX:55934000-55936000	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chrX:55934000-55936000	Active TSS	Rectal Smooth Muscle	rectum
31	chrX:55934000-55938800	Active TSS	GM12878-XiMat	blood
32	chrX:55934200-55934400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chrX:55934200-55934400	Enhancers	Primary T cells fromperipheralblood	blood
34	chrX:55934200-55934400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chrX:55934200-55934400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chrX:55934200-55934400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chrX:55934200-55934400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chrX:55934200-55934400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chrX:55934200-55934400	Enhancers	Aorta	Aorta
40	chrX:55934200-55934400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chrX:55934200-55934400	Flanking Active TSS	Fetal Intestine Large	intestine
42	chrX:55934200-55934400	Flanking Active TSS	Fetal Intestine Small	intestine
43	chrX:55934200-55934400	Flanking Active TSS	Fetal Kidney	kidney
44	chrX:55934200-55934400	Flanking Active TSS	Fetal Thymus	thymus
45	chrX:55934200-55934400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chrX:55934200-55934600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chrX:55934200-55934600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chrX:55934200-55934600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chrX:55934200-55934600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chrX:55934200-55934600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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