Variant report

Variant	esv2758092
Chromosome Location	chr6:163992064-164161903
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2166)
CpG islands
(count:2262)
Chromatin interactive
region (count:112)
LncRNA
region (count:26)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:164005312-164005574	K562	blood:	n/a	n/a
2	ARID3A	chr6:164152559-164152980	K562	blood:	n/a	n/a
3	ARID3A	chr6:164003984-164004056	K562	blood:	n/a	n/a
4	ARID3A	chr6:164006809-164007648	K562	blood:	n/a	n/a
5	ARID3A	chr6:163991319-163992330	K562	blood:	n/a	n/a
6	ARID3A	chr6:164017085-164017671	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:164008885-164009211	K562	blood:	n/a	n/a
8	ARID3A	chr6:164006334-164006521	K562	blood:	n/a	n/a
9	ARID3A	chr6:163999994-164001641	K562	blood:	n/a	chr6:164001508-164001524
10	ARID3A	chr6:163992969-163994178	K562	blood:	n/a	n/a
11	ATF1	chr6:164152416-164152769	K562	blood:	n/a	n/a
12	ATF1	chr6:164086651-164086852	K562	blood:	n/a	n/a
13	ATF1	chr6:164022474-164022637	K562	blood:	n/a	n/a
14	ATF1	chr6:164131638-164131906	K562	blood:	n/a	n/a
15	ATF1	chr6:164006870-164007582	K562	blood:	n/a	n/a
16	ATF1	chr6:163993566-163993957	K562	blood:	n/a	n/a
17	ATF1	chr6:164088765-164089053	K562	blood:	n/a	n/a
18	ATF2	chr6:164126818-164127557	GM12878	blood:	n/a	n/a
19	ATF2	chr6:164126940-164127432	GM12878	blood:	n/a	n/a
20	ATF2	chr6:164128942-164130110	GM12878	blood:	n/a	n/a
21	ATF2	chr6:164088530-164089225	GM12878	blood:	n/a	n/a
22	ATF2	chr6:164128839-164130052	GM12878	blood:	n/a	n/a
23	ATF2	chr6:164088636-164089132	GM12878	blood:	n/a	n/a
24	ATF2	chr6:164058458-164058970	GM12878	blood:	n/a	n/a
25	ATF2	chr6:164133080-164133669	GM12878	blood:	n/a	n/a
26	ATF2	chr6:164000321-164001315	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF3	chr6:164152470-164152727	K562	blood:	n/a	chr6:164152603-164152617
28	ATF3	chr6:164006791-164007287	HCT-116	colon:	n/a	n/a
29	ATF3	chr6:164152439-164152799	K562	blood:	n/a	chr6:164152603-164152617
30	ATF3	chr6:163993656-163993839	K562	blood:	n/a	n/a
31	ATF3	chr6:164006813-164007431	K562	blood:	n/a	n/a
32	ATF3	chr6:164092453-164092716	K562	blood:	n/a	n/a
33	ATF3	chr6:164006944-164007133	K562	blood:	n/a	n/a
34	ATF3	chr6:163993550-163993927	K562	blood:	n/a	n/a
35	BACH1	chr6:163993659-163993995	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr6:164055676-164055743	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr6:164122730-164122736	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr6:164000382-164000582	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr6:164000513-164000646	K562	blood:	n/a	n/a
40	BACH1	chr6:163993665-163993903	K562	blood:	n/a	n/a
41	BATF	chr6:164126985-164127397	GM12878	blood:	n/a	n/a
42	BATF	chr6:164129433-164129777	GM12878	blood:	n/a	chr6:164129594-164129604 chr6:164129593-164129604
43	BATF	chr6:164129319-164129897	GM12878	blood:	n/a	chr6:164129594-164129604 chr6:164129593-164129604
44	BATF	chr6:164058546-164058961	GM12878	blood:	n/a	chr6:164058756-164058766
45	BATF	chr6:164058505-164058914	GM12878	blood:	n/a	chr6:164058756-164058766
46	BCL11A	chr6:164126936-164127474	GM12878	blood:	n/a	n/a
47	BCL11A	chr6:164129319-164129894	GM12878	blood:	n/a	chr6:164129596-164129605 chr6:164129597-164129606
48	BCL3	chr6:164004504-164005998	K562	blood:	n/a	chr6:164004756-164004765 chr6:164005465-164005474 chr6:164005466-164005475
49	BCL3	chr6:164086249-164086880	GM12878	blood:	n/a	n/a
50	BCL3	chr6:164001036-164001406	A549	lung:	n/a	n/a

(count:2262 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:164009761-164009811	LNCaP	prostate:	n/a
2	chr6:164088958-164089008	NB4	blood:	n/a
3	chr6:164057029-164057079	T-47D	breast:	n/a
4	chr6:164092410-164092460	HRPEpiC	eye:	n/a
5	chr6:164029303-164029353	AG09319	gingival:	n/a
6	chr6:164009761-164009811	LNCaP	prostate:	n/a
7	chr6:164088958-164089008	NB4	blood:	n/a
8	chr6:164057029-164057079	T-47D	breast:	n/a
9	chr6:164092410-164092460	HRPEpiC	eye:	n/a
10	chr6:164029303-164029353	AG09319	gingival:	n/a
11	chr6:164011659-164011709	Hela-S3	cervix:	n/a
12	chr6:164029388-164029438	HRCEpiC	kidney:	n/a
13	chr6:164096335-164096385	HPAEpiC	pulmonary alveolar:	n/a
14	chr6:164137946-164137996	T-47D	breast:	n/a
15	chr6:164088958-164089008	PrEC	prostate:	n/a
16	chr6:164051738-164051788	HMEC	breast:	n/a
17	chr6:164057152-164057202	AG10803	skin:	n/a
18	chr6:164047621-164047671	SAEC	small airway:	n/a
19	chr6:164051859-164051909	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:163994355-163994405	SK-N-SH_RA	brain:	n/a
21	chr6:164057152-164057202	BE2_C	brain:	n/a
22	chr6:164052180-164052230	HAEpiC	amniotic membrane:	n/a
23	chr6:164056932-164056982	HIPEpiC	eye:	n/a
24	chr6:164092631-164092681	U87	brain:	n/a
25	chr6:164029388-164029438	AG04450	lung:	fetal
26	chr6:164061673-164061723	SK-N-MC	brain:	n/a
27	chr6:164092862-164092912	NHDF-neo	bronchial:	n/a
28	chr6:164029556-164029606	HEK293	kidney:	embryo
29	chr6:164009761-164009811	RPTEC	kidney:	n/a
30	chr6:164047621-164047671	H1-hESC	embryonic stem cell:	embryo
31	chr6:164093099-164093149	AG10803	skin:	n/a
32	chr6:164052725-164052775	MCF-7	breast:	n/a
33	chr6:164092588-164092638	AG04449	skin:	fetal
34	chr6:164092588-164092638	HNPCEpiC	eye:	n/a
35	chr6:164062746-164062796	A549	lung:	n/a
36	chr6:164029303-164029353	HMEC	breast:	n/a
37	chr6:164092588-164092638	AoSMC	blood vessel:	n/a
38	chr6:164009657-164009707	NH-A	brain:	n/a
39	chr6:163998574-163998624	MCF10A-Er-Src	breast:	n/a
40	chr6:164092588-164092638	CMK	blood:	n/a
41	chr6:164061946-164061996	GM06990	blood:	n/a
42	chr6:164009761-164009811	SAEC	small airway:	n/a
43	chr6:164051738-164051788	NHBE	bronchial:	n/a
44	chr6:164137946-164137996	HNPCEpiC	eye:	n/a
45	chr6:164092631-164092681	BE2_C	brain:	n/a
46	chr6:164094293-164094343	BJ	skin:	n/a
47	chr6:164092588-164092638	HEK293	kidney:	embryo
48	chr6:164093099-164093149	MCF-7	breast:	n/a
49	chr6:164051738-164051788	MCF10A-Er-Src	breast:	n/a
50	chr6:164093014-164093064	SKMC	muscle:	n/a

(count:112 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:163881425..163884051-chr6:164006654..164009076,2	K562	blood:
2	chr6:163832665..163835170-chr6:164019087..164021552,2	K562	blood:
3	chr6:164148787..164150602-chr6:164160193..164162376,2	K562	blood:
4	chr6:27775500..27777130-chr6:164134294..164136651,2	MCF-7	breast:
5	chr6:163832753..163835085-chr6:163989937..163992434,2	MCF-7	breast:
6	chr6:164046203..164050114-chr6:164051224..164053273,3	MCF-7	breast:
7	chr6:164029433..164031807-chr6:164055336..164057552,2	K562	blood:
8	chr6:164043532..164045375-chr6:164056217..164059055,2	K562	blood:
9	chr6:164132884..164135744-chr6:164150540..164152159,2	K562	blood:
10	chr6:164118210..164119752-chr6:164140006..164142481,2	K562	blood:
11	chr6:164131958..164135418-chr6:164137750..164141579,4	K562	blood:
12	chr6:164001758..164003357-chr6:164013083..164015410,2	K562	blood:
13	chr6:164081712..164084743-chr6:164086465..164089589,3	K562	blood:
14	chr6:164115301..164117140-chr6:164125243..164127219,2	K562	blood:
15	chr6:164104118..164105951-chr6:164112390..164114240,2	K562	blood:
16	chr6:164130686..164133462-chr6:164319351..164322024,2	K562	blood:
17	chr6:164015543..164019419-chr6:164019767..164023653,5	K562	blood:
18	chr6:164131958..164136902-chr6:164137750..164142946,6	K562	blood:
19	chr6:163931741..163933882-chr6:163991613..163993887,2	K562	blood:
20	chr6:164131958..164136902-chr6:164137750..164142946,6	K562	blood:
21	chr6:163836225..163838029-chr6:164010550..164012428,2	K562	blood:
22	chr6:164129205..164131317-chr6:164138569..164140374,2	MCF-7	breast:
23	chr6:164147443..164149403-chr6:164151642..164153523,2	K562	blood:
24	chr6:164108307..164110350-chr6:164112342..164114200,2	K562	blood:
25	chr6:161692680..161695197-chr6:163990943..163993685,2	K562	blood:
26	chr6:163602004..163602618-chr6:164000681..164001345,2	MCF-7	breast:
27	chr6:163832916..163835689-chr6:163998720..164000334,2	K562	blood:
28	chr6:164132884..164135744-chr6:164150540..164152159,2	K562	blood:
29	chr6:164012843..164014489-chr6:164039863..164041950,2	K562	blood:
30	chr6:164008310..164010271-chr6:164015070..164017257,2	K562	blood:
31	chr6:164029433..164031807-chr6:164055336..164057552,2	K562	blood:
32	chr6:164128182..164130278-chr6:164132166..164136192,3	K562	blood:
33	chr6:164007449..164010617-chr6:164019877..164022643,3	K562	blood:
34	chr6:164072890..164076945-chr6:164079644..164083492,4	K562	blood:
35	chr6:164151367..164155187-chr6:164160904..164163779,4	MCF-7	breast:
36	chr6:164104118..164105951-chr6:164112390..164114240,2	K562	blood:
37	chr6:164001758..164003357-chr6:164013083..164015410,2	K562	blood:
38	chr6:164142207..164144992-chr6:164152114..164154827,2	K562	blood:
39	chr6:163989917..163992171-chr6:164159430..164162397,2	K562	blood:
40	chr6:163999887..164002454-chr6:164029460..164032387,2	K562	blood:
41	chr6:164032292..164034079-chr6:164041975..164043512,2	K562	blood:
42	chr6:163833058..163837205-chr6:163990300..163993752,7	K562	blood:
43	chr6:163834825..163838285-chr6:164001689..164007516,7	K562	blood:
44	chr6:164010756..164012462-chr6:164013276..164015436,2	K562	blood:
45	chr6:164062128..164064431-chr6:164064679..164066941,2	K562	blood:
46	chr6:164154250..164155922-chr6:164197149..164199809,2	K562	blood:
47	chr6:164072890..164076945-chr6:164079644..164083492,4	K562	blood:
48	chr6:163833702..163836881-chr6:164004949..164008923,4	K562	blood:
49	chr6:164015543..164017705-chr6:164019767..164021884,2	K562	blood:
50	chr6:164010756..164012462-chr6:164013276..164015436,2	K562	blood:

(count:26 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-16	chr6:164008747-164009197	ENSG00000228692.2
2	lnc-AL078585.1-18	chr6:164053090-164054364	l_3314_chr6:164053089-164054800_testes
3	lnc-AL078585.1-16	chr6:164007615-164007765	ENSG00000228692.2
4	lnc-AL078585.1-18	chr6:164054759-164054800	l_3314_chr6:164053089-164054800_testes
5	lnc-QKI-7	chr6:164012620-164012718	l_3313_chr6:164012619-164101537_testes
6	lnc-QKI-2	chr6:164092636-164092728	XLOC_005531
7	lnc-QKI-2	chr6:164092630-164092728	XLOC_005531
8	lnc-QKI-1	chr6:164007615-164007760	XLOC_005530
9	lnc-AL078585.1-5	chr6:164092353-164092730	XLOC_005912
10	lnc-AL078585.1-5	chr6:164085403-164085689	XLOC_005912
11	lnc-QKI-2	chr6:164124938-164125037	XLOC_005531
12	lnc-QKI-8	chr6:164114199-164114248	l_3315_chr6:164114198-164115583_testes
13	lnc-AL078585.1-19	chr6:164133908-164134374	NONHSAT115975
14	lnc-AL078585.1-19	chr6:164134769-164135824	NONHSAT115975
15	lnc-QKI-1	chr6:164008744-164009197	XLOC_005530
16	lnc-QKI-7	chr6:164100494-164101537	l_3313_chr6:164012619-164101537_testes
17	lnc-QKI-8	chr6:164114916-164115637	l_3315_chr6:164114198-164115583_testes
18	lnc-AL078585.1-17	chr6:164011148-164011185	NONHSAT115967
19	lnc-QKI-7	chr6:164044928-164045027	l_3313_chr6:164012619-164101537_testes
20	lnc-QKI-7	chr6:164100247-164100863	NONHSAT115969
21	lnc-AL078585.1-19	chr6:164134590-164134640	NONHSAT115975
22	lnc-QKI-7	chr6:164100247-164100452	l_3313_chr6:164012619-164101537_testes
23	lnc-AL078585.1-17	chr6:163998474-163998807	NONHSAT115967
24	lnc-QKI-2	chr6:164124936-164125037	XLOC_005531
25	lnc-QKI-2	chr6:164124938-164125037	XLOC_005531
26	lnc-QKI-7	chr6:164044926-164045027	NONHSAT115969

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	QKI	hsa-miR-222-3p	chr6:163992723-163992730
2	QKI	hsa-miR-124-3p	chr6:163992895-163992902
3	QKI	hsa-miR-425-5p	chr6:163993209-163993230
4	QKI	hsa-miR-222-3p	chr6:163994294-163994314
5	QKI	hsa-miR-124-3p	chr6:163992883-163992902
6	QKI	hsa-miR-222-3p	chr6:163992710-163992730

Variant related genes	Relation type
ENSG00000228692	TF binding region
ENSG00000235538	TF binding region
ENSG00000228692	CpG island
ENSG00000235538	CpG island
ENSG00000235538	chromatin interactions
ENSG00000270419	chromatin interactions
ENSG00000228692	chromatin interactions
ENSG00000112531	chromatin interactions
ENSG00000196747	chromatin interactions
ENSG00000185130	chromatin interactions
ENSG00000026652	chromatin interactions
CDKN1B	miRNA target sites
CDKN1A	miRNA target sites
BCL2L11	miRNA target sites

Extended variants
information (count: 6663 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:6663 , 50 per page) page: 1 2 3 4 5 6 7 ... 134

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139698255	chr6:163992105-163992106	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs529604882	chr6:163992115-163992116	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs149759966	chr6:163992116-163992117	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs534204730	chr6:163992121-163992122	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs190520806	chr6:163992171-163992172	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs572295308	chr6:163992183-163992184	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs576967937	chr6:163992284-163992285	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs546107291	chr6:163992365-163992366	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs377288396	chr6:163992378-163992379	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs1044933	chr6:163992463-163992464	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs539236646	chr6:163992480-163992481	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs528964328	chr6:163992508-163992509	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs374319897	chr6:163992524-163992525	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs34691525	chr6:163992554-163992555	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs551993407	chr6:163992561-163992562	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs369780013	chr6:163992562-163992563	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs555969040	chr6:163992573-163992574	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs564478766	chr6:163992609-163992610	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs576208528	chr6:163992614-163992615	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs17592297	chr6:163992644-163992645	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs145774238	chr6:163992667-163992668	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs562025998	chr6:163992704-163992705	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs571942374	chr6:163992742-163992743	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs60102616	chr6:163992751-163992752	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs551249653	chr6:163992752-163992753	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs552920936	chr6:163992755-163992756	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs397809738	chr6:163992760-163992761	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs61026681	chr6:163992767-163992768	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs544111762	chr6:163992797-163992798	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs541067529	chr6:163992810-163992811	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs564154244	chr6:163992849-163992850	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs533087943	chr6:163992850-163992851	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs181661079	chr6:163992912-163992913	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs569308184	chr6:163992991-163992992	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs562903219	chr6:163993042-163993043	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs531941506	chr6:163993124-163993125	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs548549949	chr6:163993125-163993126	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs184408766	chr6:163993143-163993144	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs9784871	chr6:163993182-163993183	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs550319868	chr6:163993197-163993198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs574977097	chr6:163993358-163993359	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs374000807	chr6:163993420-163993421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs570592704	chr6:163993441-163993442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs112224029	chr6:163993444-163993445	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs562005778	chr6:163993530-163993531	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs148946772	chr6:163993531-163993532	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs556254675	chr6:163993536-163993537	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs576118056	chr6:163993611-163993612	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs386409220	chr6:163993703-163993704	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs551227668	chr6:163993709-163993710	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1727 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163949600-163995400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:163951200-163993200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:163952600-163996600	Weak transcription	Gastric	stomach
4	chr6:163959800-163997200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:163960600-163993000	Weak transcription	A549	lung
6	chr6:163965600-163995000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:163970800-164000200	Weak transcription	Right Atrium	heart
8	chr6:163972600-163995600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:163974000-163997000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:163974200-163997000	Weak transcription	Fetal Intestine Large	intestine
11	chr6:163976000-163993200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:163977000-163993000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:163978000-163998000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:163978800-163997600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:163979200-163996200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:163980000-163997200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:163980200-163996000	Weak transcription	Small Intestine	intestine
18	chr6:163982600-163994000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:163982800-163996800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:163982800-163998000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:163983000-163998400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:163983200-163993400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:163983200-163997400	Weak transcription	Fetal Brain Female	brain
24	chr6:163984200-163993400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:163984800-163994000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:163984800-163995000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:163984800-163995400	Weak transcription	Psoas Muscle	Psoas
28	chr6:163984800-164000000	Weak transcription	Right Ventricle	heart
29	chr6:163985000-164006800	Weak transcription	Spleen	Spleen
30	chr6:163985800-163996600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:163985800-163997600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:163986600-163992200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:163986600-164007000	Weak transcription	Aorta	Aorta
34	chr6:163987600-164007000	Weak transcription	Hela-S3	cervix
35	chr6:163987800-164000200	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:163988000-163995400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:163989200-163995000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:163989600-163995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:163989600-163997800	Enhancers	Brain Hippocampus Middle	brain
40	chr6:163989800-163994400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:163990400-163992400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:163990400-163992600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:163990600-163993200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:163990800-163992400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:163990800-163992600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:163990800-163992600	Strong transcription	NHDF-Ad	bronchial
47	chr6:163991000-163992200	Strong transcription	Dnd41	blood
48	chr6:163991000-163992200	Strong transcription	GM12878-XiMat	blood
49	chr6:163991000-163992400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:163991000-163992400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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