Variant report

Variant	esv2761562
Chromosome Location	chr9:141025318-141033148
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr9:141027620-141027978	K562	blood:	n/a	n/a
2	CTCF	chr9:141031680-141031830	WERI-Rb-1	eye:	n/a	chr9:141031781-141031799 chr9:141031783-141031804
3	CTCF	chr9:141026740-141026890	GM12873	blood:	n/a	n/a
4	CTCF	chr9:141026728-141026789	MCF-7	breast:	n/a	n/a
5	CTCF	chr9:141026720-141026870	HCFaa	heart:	n/a	n/a
6	CTCF	chr9:141027792-141027844	GM10266	blood:	n/a	n/a
7	CTCF	chr9:141026714-141026804	MCF-7	breast:	n/a	n/a
8	CTCF	chr9:141031723-141031832	HepG2	liver:	n/a	chr9:141031781-141031799 chr9:141031783-141031804
9	CTCF	chr9:141026700-141026850	HEK293	kidney:	n/a	n/a
10	CTCF	chr9:141026760-141026910	A549	lung:	n/a	n/a
11	CTCF	chr9:141027739-141027748	GM13976	blood:	n/a	n/a
12	CTCF	chr9:141026620-141026770	GM12874	blood:	n/a	n/a
13	CTCF	chr9:141026700-141026850	GM12865	blood:	n/a	n/a
14	CTCF	chr9:141026922-141026955	GM10248	blood:	n/a	n/a
15	CTCF	chr9:141026740-141026890	MCF-7	breast:	n/a	n/a
16	FOSL2	chr9:141027476-141027866	HepG2	liver:	n/a	n/a
17	FOXA1	chr9:141027287-141027822	HepG2	liver:	n/a	n/a
18	FOXA1	chr9:141027827-141028383	HepG2	liver:	n/a	n/a
19	FOXA2	chr9:141027318-141027746	A549	lung:	n/a	n/a
20	GATA2	chr9:141027563-141028058	K562	blood:	n/a	n/a
21	HEY1	chr9:141028802-141029377	HepG2	liver:	n/a	n/a
22	HEY1	chr9:141027365-141028454	HepG2	liver:	n/a	n/a
23	HEY1	chr9:141027523-141027772	HepG2	liver:	n/a	n/a
24	JUND	chr9:141027480-141027751	HepG2	liver:	n/a	n/a
25	JUND	chr9:141027512-141027665	HepG2	liver:	n/a	n/a
26	MYC	chr9:141029235-141029425	HepG2	liver:	n/a	n/a
27	MYC	chr9:141033086-141033100	H1-hESC	embryonic stem cell:	n/a	n/a
28	MYC	chr9:141033136-141033228	H1-hESC	embryonic stem cell:	n/a	n/a
29	MYC	chr9:141029303-141029365	MCF-7	breast:	n/a	n/a
30	MYC	chr9:141029613-141029678	HUVEC	blood vessel:	n/a	n/a
31	NR3C1	chr9:141027470-141027859	A549	lung:	n/a	n/a
32	NR3C1	chr9:141027551-141027766	A549	lung:	n/a	n/a
33	NR3C1	chr9:141027413-141028030	A549	lung:	n/a	n/a
34	NR3C1	chr9:141027409-141028001	A549	lung:	n/a	n/a
35	POLR2A	chr9:141027580-141027745	A549	lung:	n/a	n/a
36	POLR2A	chr9:141028016-141028338	HepG2	liver:	n/a	n/a
37	POLR2A	chr9:141027486-141027786	HepG2	liver:	n/a	n/a
38	POLR2A	chr9:141028413-141028718	HepG2	liver:	n/a	n/a
39	POLR2A	chr9:141028355-141028367	HepG2	liver:	n/a	n/a
40	POLR2A	chr9:141031439-141031640	GM12878	blood:	n/a	n/a
41	POLR2A	chr9:141029196-141029687	HepG2	liver:	n/a	n/a
42	POLR2A	chr9:141028121-141028385	HepG2	liver:	n/a	n/a
43	POLR2A	chr9:141027541-141027771	HepG2	liver:	n/a	n/a
44	POLR2A	chr9:141027471-141027784	HepG2	liver:	n/a	n/a
45	POLR2A	chr9:141027547-141027749	HepG2	liver:	n/a	n/a
46	POLR2A	chr9:141028762-141028797	HepG2	liver:	n/a	n/a
47	POLR2A	chr9:141028589-141029007	HepG2	liver:	n/a	n/a
48	POLR2A	chr9:141029688-141029691	HepG2	liver:	n/a	n/a
49	RXRA	chr9:141027409-141027832	HepG2	liver:	n/a	n/a
50	RXRA	chr9:141027961-141028304	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000229926	TF binding region

Extended variants
information (count: 378 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:378 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574179191	chr9:141025318-141025319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs11137376	chr9:141025328-141025329	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs555717196	chr9:141025390-141025391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566277315	chr9:141025391-141025392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs534977727	chr9:141025396-141025397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs2313108	chr9:141025442-141025443	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs577573101	chr9:141025448-141025449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537085327	chr9:141025455-141025456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182067298	chr9:141025472-141025473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112864710	chr9:141025514-141025515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111484634	chr9:141025516-141025517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574086644	chr9:141025573-141025574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186545137	chr9:141025582-141025583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189878588	chr9:141025682-141025683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11137377	chr9:141025752-141025753	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs112951962	chr9:141025765-141025766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs541288383	chr9:141025795-141025796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs118089095	chr9:141025804-141025805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs144085048	chr9:141025805-141025806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549830957	chr9:141025809-141025810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs377171725	chr9:141025935-141025936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565328325	chr9:141025942-141025943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs181429395	chr9:141025971-141025972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375035110	chr9:141025972-141025973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112672900	chr9:141025993-141025994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549082294	chr9:141026002-141026003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538471028	chr9:141026027-141026028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566093817	chr9:141026045-141026046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534896226	chr9:141026068-141026069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs551647387	chr9:141026089-141026090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565577955	chr9:141026120-141026121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185451472	chr9:141026154-141026155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374137354	chr9:141026158-141026159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376787442	chr9:141026183-141026184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377339904	chr9:141026211-141026212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574003336	chr9:141026236-141026237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189813276	chr9:141026261-141026262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs28670131	chr9:141026268-141026269	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs2606383	chr9:141026269-141026270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs2606382	chr9:141026307-141026308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs17583562	chr9:141026318-141026319	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs371305783	chr9:141026355-141026356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs564351875	chr9:141026356-141026357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs578024324	chr9:141026367-141026368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543754625	chr9:141026385-141026386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs563108531	chr9:141026456-141026457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs9410076	chr9:141026461-141026462	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs367872607	chr9:141026466-141026467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200743121	chr9:141026470-141026471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs116843317	chr9:141026481-141026482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140988200-141044600	Weak transcription	Right Atrium	heart

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