Variant report

Variant	esv3322738
Chromosome Location	chr20:26060652-26075650
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-4	chr20:26063530-26063584	ENSG00000125804.9
2	lnc-FAM182A-4	chr20:26073445-26073683	ENSG00000125804.9
3	lnc-FAM182A-4	chr20:26072148-26072255	ENSG00000125804.9
4	lnc-FAM182A-4	chr20:26061824-26062026	ENSG00000125804.9
5	lnc-FAM182A-4	chr20:26061824-26062026	ENSG00000125804.9

Extended variants
information (count: 60 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555858420	chr20:26061828-26061829	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs78032466	chr20:26061831-26061832	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs202055374	chr20:26061845-26061846	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs74752031	chr20:26061859-26061860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs375533025	chr20:26061861-26061862	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs79051971	chr20:26061865-26061866	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs74473084	chr20:26061877-26061878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs201060175	chr20:26061878-26061879	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs80023315	chr20:26061880-26061881	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs199682824	chr20:26061883-26061884	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs78196071	chr20:26061884-26061885	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs200307719	chr20:26061890-26061891	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs369665206	chr20:26061907-26061908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs201481983	chr20:26061908-26061909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs116264914	chr20:26061909-26061910	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs75066699	chr20:26061922-26061923	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs199783135	chr20:26061943-26061944	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs574892336	chr20:26061956-26061957	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs144572655	chr20:26061960-26061961	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs540928790	chr20:26061963-26061964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs200610416	chr20:26061967-26061968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs201916657	chr20:26061993-26061994	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs74725001	chr20:26062002-26062003	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs554477366	chr20:26062009-26062010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs577326480	chr20:26062010-26062011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs79451834	chr20:26062021-26062022	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs373176381	chr20:26063532-26063533	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs375841625	chr20:26063547-26063548	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs5742261	chr20:26063560-26063561	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs548056525	chr20:26063576-26063577	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs201158839	chr20:26063577-26063578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs201752002	chr20:26063579-26063580	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs200128934	chr20:26063581-26063582	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs201879572	chr20:26072156-26072157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs575138670	chr20:26072168-26072169	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs201228551	chr20:26072169-26072170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs201505834	chr20:26072171-26072172	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs543992943	chr20:26072173-26072174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs113860496	chr20:26072181-26072182	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs200318662	chr20:26072199-26072200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs561000532	chr20:26072217-26072218	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs529737140	chr20:26072229-26072230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs6138789	chr20:26072248-26072249	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
44	rs141693243	chr20:26072253-26072254	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs570241868	chr20:26073457-26073458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs6132919	chr20:26073480-26073481	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
47	rs559148712	chr20:26073485-26073486	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs79462922	chr20:26073487-26073488	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs75192218	chr20:26073516-26073517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs374700437	chr20:26073526-26073527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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