Variant report

Variant	esv3337393
Chromosome Location	chr6:165877755-165878319
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537855038	chr6:165877756-165877757	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs139049198	chr6:165877757-165877758	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs578058384	chr6:165877758-165877759	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs539162269	chr6:165877786-165877787	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs59698636	chr6:165877805-165877806	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs187041810	chr6:165877812-165877813	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs192374540	chr6:165877844-165877845	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs543213302	chr6:165877872-165877873	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs561275578	chr6:165877908-165877909	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs576717779	chr6:165877934-165877935	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs543746475	chr6:165878069-165878070	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs575073675	chr6:165878100-165878101	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs7738620	chr6:165878113-165878114	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs183329053	chr6:165878140-165878141	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs7738768	chr6:165878165-165878166	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs145226238	chr6:165878166-165878167	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs559827123	chr6:165878208-165878209	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs201324907	chr6:165878217-165878218	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs527349924	chr6:165878228-165878229	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs549206988	chr6:165878238-165878239	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs572319506	chr6:165878247-165878248	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs7743001	chr6:165878257-165878258	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
2	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
3	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:165863200-165882000	Weak transcription	HSMM	muscle
5	chr6:165874800-165883000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:165877800-165896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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