Variant report

Variant	esv3339931
Chromosome Location	chr11:59814776-59818974
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:131 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149153255	chr11:59814793-59814794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs112324466	chr11:59814824-59814825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557619931	chr11:59814828-59814829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186737819	chr11:59814851-59814852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546312568	chr11:59814854-59814855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373715286	chr11:59814866-59814867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs143295946	chr11:59814878-59814879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146949348	chr11:59814909-59814910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574253529	chr11:59814923-59814924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148290699	chr11:59814963-59814964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565802558	chr11:59814968-59814969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs536344036	chr11:59814981-59814982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554653519	chr11:59815005-59815006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs377070126	chr11:59815015-59815016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs141427511	chr11:59815022-59815023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569107635	chr11:59815054-59815055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371771604	chr11:59815057-59815058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538118445	chr11:59815107-59815108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1144748	chr11:59815117-59815118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12362575	chr11:59815128-59815129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556787103	chr11:59815134-59815135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs10501381	chr11:59815139-59815140	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs545617936	chr11:59815155-59815156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554060813	chr11:59815156-59815157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs191509253	chr11:59815185-59815186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542663868	chr11:59815188-59815189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs560957950	chr11:59815201-59815202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531566219	chr11:59815221-59815222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183989892	chr11:59815275-59815276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188637451	chr11:59815291-59815292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532290667	chr11:59815326-59815327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs554194487	chr11:59815357-59815358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373583956	chr11:59815365-59815366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs547611465	chr11:59815496-59815497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs663925	chr11:59815517-59815518	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs529819417	chr11:59815567-59815568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562787978	chr11:59815580-59815581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150411430	chr11:59815594-59815595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs1151102	chr11:59815640-59815641	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs138472245	chr11:59815659-59815660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558252920	chr11:59815710-59815711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs571945893	chr11:59815713-59815714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545457361	chr11:59815784-59815785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs78420786	chr11:59815834-59815835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565055127	chr11:59815865-59815866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs554344171	chr11:59815888-59815889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192977922	chr11:59815926-59815927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542729715	chr11:59815996-59815997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1286383	chr11:59816001-59816002	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs185625181	chr11:59816054-59816055	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Autism	22495309	CNVD
Autism	20808228	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Lung adenocarcinoma	17086460	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59813800-59822400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:59816000-59816200	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links