Variant report

Variant	esv3351770
Chromosome Location	chr13:87824000-87847009
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-17	chr13:87842458-87842506	NONHSAT034582
2	lnc-SLITRK5-17	chr13:87840003-87840983	NONHSAT034582

Extended variants
information (count: 830 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:830 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566739170	chr13:87829800-87829801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs543741154	chr13:87829807-87829808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111271342	chr13:87829809-87829810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs532779997	chr13:87829824-87829825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs534097386	chr13:87829917-87829918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373885526	chr13:87829927-87829928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537756561	chr13:87829966-87829967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs73565477	chr13:87829967-87829968	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs567863944	chr13:87829968-87829969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs200904535	chr13:87830012-87830013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535270419	chr13:87830021-87830022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77649596	chr13:87830073-87830074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74103203	chr13:87830124-87830125	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs538636527	chr13:87830129-87830130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs147348072	chr13:87830142-87830143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs373032736	chr13:87830164-87830165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs185679478	chr13:87830202-87830203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188973195	chr13:87830229-87830230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561498280	chr13:87830237-87830238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs181163103	chr13:87830245-87830246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541260625	chr13:87830247-87830248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559167859	chr13:87830280-87830281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202004438	chr13:87830283-87830284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs537950784	chr13:87830295-87830296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs73565478	chr13:87830304-87830305	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs551361436	chr13:87830317-87830318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs73565483	chr13:87830331-87830332	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs111590737	chr13:87830337-87830338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs190936614	chr13:87830351-87830352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113123039	chr13:87830358-87830359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs528665533	chr13:87830361-87830362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547202727	chr13:87830385-87830386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77791834	chr13:87830395-87830396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35827332	chr13:87830426-87830427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs539136925	chr13:87830475-87830476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556894677	chr13:87830517-87830518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs112061179	chr13:87830545-87830546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs574702403	chr13:87830583-87830584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs542160826	chr13:87830613-87830614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs373368956	chr13:87830623-87830624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs74103206	chr13:87830626-87830627	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs573911776	chr13:87830668-87830669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530628826	chr13:87830685-87830686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139983307	chr13:87830686-87830687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs5805429	chr13:87830710-87830711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs77371325	chr13:87830718-87830719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs398039025	chr13:87830720-87830721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs186141545	chr13:87830772-87830773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs577624803	chr13:87830784-87830785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545128701	chr13:87830867-87830868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87829800-87834400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87833600-87833800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:87833800-87834000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:87834000-87836600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:87834400-87834600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:87834600-87834800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:87836600-87837000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:87837800-87838400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:87838000-87839000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:87838000-87839800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:87838200-87838400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:87838400-87838800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:87838400-87839000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:87838400-87839400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:87838400-87839800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:87838400-87839800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:87838400-87840200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr13:87838800-87840600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:87839000-87839600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:87839000-87839800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr13:87839400-87840200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:87839600-87839800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr13:87839800-87840800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr13:87839800-87842400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr13:87839800-87842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:87840200-87841200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr13:87840600-87845200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:87840800-87844200	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr13:87841200-87844800	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr13:87842400-87843800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:87842400-87844200	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr13:87842600-87842800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr13:87842600-87843600	Active TSS	H9 Cell Line	embryonic stem cell
34	chr13:87842800-87843000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr13:87842800-87843200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr13:87843000-87843400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr13:87843200-87843400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:87844200-87844600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr13:87844200-87845200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr13:87844400-87844800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr13:87844600-87845000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr13:87844800-87845800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr13:87845200-87845800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:87845800-87846000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
45	chr13:87845800-87848400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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