Variant report

Variant	esv3352924
Chromosome Location	chr4:153096149-153096838
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:153095102..153097156-chr4:153098765..153101280,3	K562	blood:
2	chr4:153092306..153094801-chr4:153095527..153097409,2	K562	blood:
3	chr4:153095102..153097789-chr4:153099165..153101280,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160A1-11	chr4:153096593-153096858	ucscGeneNc_uc003imn_2

Variant related genes	Relation type
ENSG00000250706	chromatin interactions

Extended variants
information (count: 29 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370285637	chr4:153096210-153096211	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs111325101	chr4:153096219-153096220	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs368301214	chr4:153096229-153096230	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs116598751	chr4:153096252-153096253	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs577166862	chr4:153096304-153096305	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs544322768	chr4:153096313-153096314	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs187986156	chr4:153096352-153096353	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs575241812	chr4:153096355-153096356	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs62319036	chr4:153096376-153096377	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs571837619	chr4:153096383-153096384	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376609316	chr4:153096445-153096446	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs70947395	chr4:153096446-153096447	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs553300838	chr4:153096448-153096449	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs78897289	chr4:153096465-153096466	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs375248874	chr4:153096482-153096483	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs560625598	chr4:153096497-153096498	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs62319037	chr4:153096504-153096505	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs192411354	chr4:153096515-153096516	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs201634187	chr4:153096544-153096545	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs13115998	chr4:153096545-153096546	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs550332617	chr4:153096564-153096565	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs568856708	chr4:153096613-153096614	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs376444516	chr4:153096622-153096623	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs142255910	chr4:153096641-153096642	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs566284467	chr4:153096677-153096678	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs184549835	chr4:153096688-153096689	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs559001445	chr4:153096731-153096732	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs577302892	chr4:153096786-153096787	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs78266324	chr4:153096837-153096838	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17588203	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153096800-153097000	Enhancers	Right Atrium	heart
2	chr4:153096800-153097000	Enhancers	Thymus	Thymus

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