Variant report

Variant	esv3357868
Chromosome Location	chr11:54869226-54872624
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 230 )
Associated
traits (count: 47 )

Variant overlapped rSNPs/rCNVs (count:230 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543515908	chr11:54869230-54869231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs186164403	chr11:54869231-54869232	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs374447468	chr11:54869240-54869241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs117365906	chr11:54869375-54869376	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs4341558	chr11:54869378-54869379	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs565709517	chr11:54869392-54869393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs76052000	chr11:54869410-54869411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs116014202	chr11:54869413-54869414	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs77403714	chr11:54869417-54869418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs79204356	chr11:54869418-54869419	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs76288287	chr11:54869419-54869420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs191501728	chr11:54869453-54869454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs569721374	chr11:54869458-54869459	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs567741981	chr11:54869475-54869476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs79226674	chr11:54869543-54869544	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs538428677	chr11:54869546-54869547	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs539597062	chr11:54869559-54869560	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs144095476	chr11:54869568-54869569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs111397129	chr11:54869595-54869596	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs570617210	chr11:54869598-54869599	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs75643985	chr11:54869599-54869600	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371903471	chr11:54869620-54869621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs574813623	chr11:54869621-54869622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs67317474	chr11:54869644-54869645	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs146783237	chr11:54869649-54869650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs575874358	chr11:54869676-54869677	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs182141894	chr11:54869696-54869697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs186725604	chr11:54869711-54869712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs532234236	chr11:54869739-54869740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs61898132	chr11:54869775-54869776	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs113587995	chr11:54869801-54869802	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs559064450	chr11:54869807-54869808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs529712532	chr11:54869819-54869820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs75921207	chr11:54869823-54869824	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs548149424	chr11:54869824-54869825	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs141017530	chr11:54869838-54869839	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs74647886	chr11:54869843-54869844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs530570339	chr11:54869851-54869852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs189952837	chr11:54869859-54869860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs570356951	chr11:54869880-54869881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs150250444	chr11:54869899-54869900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs61898133	chr11:54869903-54869904	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs568336056	chr11:54869905-54869906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs143127947	chr11:54869913-54869914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs535858620	chr11:54869928-54869929	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs141815413	chr11:54869934-54869935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs147504937	chr11:54869935-54869936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs567760525	chr11:54869936-54869937	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs537837750	chr11:54869954-54869955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs11533249	chr11:54869956-54869957	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:47)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Multiple myeloma	16616336	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Alcoholism	21790672	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:54863800-54872800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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