Variant report

Variant	esv3358780
Chromosome Location	chr14:65841032-65843048
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65840512..65842784-chr14:65876674..65879112,2	MCF-7	breast:
2	chr14:65841723..65843848-chr14:65877735..65880659,2	MCF-7	breast:
3	chr14:65722451..65723961-chr14:65842364..65844574,2	MCF-7	breast:
4	chr14:65826029..65827973-chr14:65840839..65842424,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUT8-4	chr14:65841500-65841624	NONHSAT037387

Variant related genes	Relation type
ENSG00000033170	chromatin interactions

Extended variants
information (count: 70 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74056758	chr14:65841063-65841064	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539907401	chr14:65841144-65841145	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs147154281	chr14:65841173-65841174	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs557728189	chr14:65841200-65841201	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs200402175	chr14:65841229-65841230	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs577308275	chr14:65841247-65841248	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs375569243	chr14:65841301-65841302	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs201420251	chr14:65841319-65841320	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs553565286	chr14:65841321-65841322	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs11627402	chr14:65841322-65841323	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs553178728	chr14:65841323-65841324	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs573256519	chr14:65841373-65841374	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs201659324	chr14:65841388-65841389	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs565614904	chr14:65841445-65841446	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs541983314	chr14:65841456-65841457	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs533750173	chr14:65841470-65841471	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs530779733	chr14:65841477-65841478	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs377403704	chr14:65841479-65841480	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs74713457	chr14:65841480-65841481	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs113500338	chr14:65841502-65841503	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs575134809	chr14:65841517-65841518	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs544095742	chr14:65841524-65841525	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs116606512	chr14:65841553-65841554	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs112543217	chr14:65841576-65841577	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs546539146	chr14:65841593-65841594	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs559913479	chr14:65841718-65841719	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs528934731	chr14:65841785-65841786	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs370789240	chr14:65841793-65841794	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs78472252	chr14:65841829-65841830	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs113591292	chr14:65841877-65841878	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs149677838	chr14:65841889-65841890	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs537548195	chr14:65841890-65841891	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs61989968	chr14:65841941-65841942	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs551275302	chr14:65841952-65841953	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs571197815	chr14:65841961-65841962	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs539762368	chr14:65841962-65841963	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs553306426	chr14:65841974-65841975	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs573162020	chr14:65842010-65842011	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs535906371	chr14:65842012-65842013	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs17102616	chr14:65842018-65842019	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs575071380	chr14:65842075-65842076	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs145452942	chr14:65842101-65842102	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs563953562	chr14:65842131-65842132	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs369987191	chr14:65842132-65842133	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs192262561	chr14:65842180-65842181	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs574559276	chr14:65842216-65842217	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs376126400	chr14:65842317-65842318	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs577486218	chr14:65842351-65842352	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs540159493	chr14:65842375-65842376	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372044213	chr14:65842398-65842399	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22032731	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Barrett''s syndrome	19417022	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21364760	CNVD
Breast cancer	17133270	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Hypoplastic left heart syndrome	22349727	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65834200-65843800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:65838800-65841600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:65840400-65841400	Enhancers	Brain Substantia Nigra	brain
4	chr14:65840400-65844200	Weak transcription	NHDF-Ad	bronchial
5	chr14:65840400-65844400	Weak transcription	GM12878-XiMat	blood
6	chr14:65840400-65850800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65840600-65843800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:65840800-65844200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:65841400-65848600	Weak transcription	Brain Substantia Nigra	brain
10	chr14:65841600-65841800	Enhancers	Duodenum Mucosa	Duodenum

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