Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr20:26048294-26048345	GM13976	blood:	n/a	n/a
2	FOSL2	chr20:26051037-26051493	HepG2	liver:	n/a	n/a
3	FOSL2	chr20:26050765-26051452	HepG2	liver:	n/a	n/a
4	FOSL2	chr20:26049701-26050038	HepG2	liver:	n/a	n/a
5	FOSL2	chr20:26048294-26048686	HepG2	liver:	n/a	n/a
6	FOSL2	chr20:26048965-26049658	HepG2	liver:	n/a	n/a
7	JUND	chr20:26050949-26051451	HepG2	liver:	n/a	n/a
8	PAX5	chr20:26050160-26050341	GM12878	blood:	n/a	n/a
9	PAX5	chr20:26050690-26051398	GM12878	blood:	n/a	n/a
10	POU2F2	chr20:26051037-26051564	GM12878	blood:	n/a	chr20:26051515-26051524 chr20:26051516-26051523 chr20:26051515-26051525 chr20:26051515-26051525
11	SIN3AK20	chr20:26050980-26051079	HepG2	liver:	n/a	n/a
12	SIX5	chr20:26051112-26051310	K562	blood:	n/a	chr20:26051190-26051206
13	SP1	chr20:26051149-26051417	HepG2	liver:	n/a	n/a
14	USF1	chr20:26048320-26048490	HepG2	liver:	n/a	n/a
15	ZBTB33	chr20:26051141-26051270	HepG2	liver:	n/a	n/a
16	ZBTB33	chr20:26051058-26051647	HepG2	liver:	n/a	n/a
17	ZBTB33	chr20:26050690-26050949	GM12878	blood:	n/a	n/a
18	ZBTB33	chr20:26050944-26051239	GM12878	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-4	chr20:26049724-26049840	ENSG00000125804.9
2	lnc-FAM182A-4	chr20:26049553-26049840	ENSG00000125804.9
3	lnc-FAM182A-4	chr20:26049553-26049796	ENSG00000125804.9
4	lnc-FAM182A-4	chr20:26049573-26049840	ENSG00000125804.9
5	lnc-FAM182A-4	chr20:26047620-26047810	ENSG00000125804.9
6	lnc-FAM182A-4	chr20:26049675-26049840	ENSG00000125804.9

Variant related genes	Relation type
FAM182A	TF binding region

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199990892	chr20:26047634-26047635	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs200762590	chr20:26047653-26047654	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs368469111	chr20:26049048-26049049	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:0 , 50 per page) page:

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