Variant report

Variant	esv3360723
Chromosome Location	chr7:104472741-104475689
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104345772..104348271-chr7:104471773..104473637,2	MCF-7	breast:

Extended variants
information (count: 135 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:135 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550033255	chr7:104472805-104472806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141352280	chr7:104472829-104472830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539000049	chr7:104472835-104472836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145087387	chr7:104472852-104472853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs571200871	chr7:104472872-104472873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544470590	chr7:104472966-104472967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs551646881	chr7:104472975-104472976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180833917	chr7:104472980-104472981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371779325	chr7:104472982-104472983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs553913814	chr7:104473000-104473001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573843295	chr7:104473033-104473034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542863641	chr7:104473055-104473056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10636405	chr7:104473071-104473072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs34785082	chr7:104473086-104473087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556419945	chr7:104473139-104473140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536726604	chr7:104473155-104473156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545023360	chr7:104473222-104473223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs375208001	chr7:104473226-104473227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555040460	chr7:104473244-104473245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs368552568	chr7:104473245-104473246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527697807	chr7:104473298-104473299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541484531	chr7:104473300-104473301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs561068411	chr7:104473311-104473312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs140902986	chr7:104473327-104473328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs6953721	chr7:104473338-104473339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs373759261	chr7:104473361-104473362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569956692	chr7:104473397-104473398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs377740562	chr7:104473407-104473408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs71748649	chr7:104473408-104473409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs532835233	chr7:104473409-104473410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79633111	chr7:104473413-104473414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377055329	chr7:104473424-104473425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552596966	chr7:104473430-104473431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371178311	chr7:104473437-104473438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373220026	chr7:104473448-104473449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71155527	chr7:104473449-104473450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571181511	chr7:104473451-104473452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs377528993	chr7:104473454-104473455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs367643124	chr7:104473457-104473458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199971551	chr7:104473460-104473461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186234001	chr7:104473461-104473462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375284709	chr7:104473470-104473471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370096787	chr7:104473472-104473473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs367576140	chr7:104473473-104473474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370328871	chr7:104473478-104473479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375524739	chr7:104473479-104473480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201822028	chr7:104473483-104473484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368774807	chr7:104473485-104473486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372397257	chr7:104473490-104473491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374184711	chr7:104473491-104473492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	21858162	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	19907438	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Myelofibrosis	22110671	CNVD
early-passage human iPS cells	21368824	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104440400-104482400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104466000-104486800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:104474800-104475200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links