Variant report

Variant	esv3363127
Chromosome Location	chr19:53212333-53273987
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1185)
CpG islands
(count:1406)
Chromatin interactive
region (count:16)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1185 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53228340-53228382	K562	blood:	n/a	n/a
2	ARID3A	chr19:53227189-53227366	K562	blood:	n/a	n/a
3	ARID3A	chr19:53238204-53238593	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:53228598-53228749	K562	blood:	n/a	n/a
5	ARID3A	chr19:53227580-53227746	HepG2	liver:	n/a	n/a
6	ATF1	chr19:53233027-53233245	K562	blood:	n/a	n/a
7	ATF1	chr19:53238100-53238672	K562	blood:	n/a	n/a
8	ATF1	chr19:53227069-53227523	K562	blood:	n/a	n/a
9	ATF1	chr19:53219224-53219418	K562	blood:	n/a	n/a
10	ATF1	chr19:53260119-53260246	K562	blood:	n/a	n/a
11	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF3	chr19:53238046-53238465	K562	blood:	n/a	n/a
14	ATF3	chr19:53228814-53229132	K562	blood:	n/a	n/a
15	BACH1	chr19:53238107-53238408	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr19:53218901-53219394	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
17	BATF	chr19:53245884-53246161	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
18	BATF	chr19:53243525-53243726	GM12878	blood:	n/a	n/a
19	BATF	chr19:53245915-53246089	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
20	BATF	chr19:53218901-53219396	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
21	BCL11A	chr19:53219022-53219347	GM12878	blood:	n/a	chr19:53219201-53219210
22	BCL11A	chr19:53238080-53238304	GM12878	blood:	n/a	n/a
23	BCL11A	chr19:53240555-53240723	GM12878	blood:	n/a	n/a
24	BCL11A	chr19:53219085-53219334	GM12878	blood:	n/a	chr19:53219201-53219210
25	BCL3	chr19:53235753-53236010	GM12878	blood:	n/a	n/a
26	BCLAF1	chr19:53237957-53238447	GM12878	blood:	n/a	chr19:53238422-53238435
27	BHLHE40	chr19:53238239-53238453	GM12878	blood:	n/a	n/a
28	BHLHE40	chr19:53238124-53238500	K562	blood:	n/a	n/a
29	BHLHE40	chr19:53227179-53227448	K562	blood:	n/a	n/a
30	BHLHE40	chr19:53229503-53229523	K562	blood:	n/a	n/a
31	BHLHE40	chr19:53228364-53229160	K562	blood:	n/a	n/a
32	BRCA1	chr19:53238025-53238612	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr19:53238114-53238309	GM12878	blood:	n/a	n/a
34	BRCA1	chr19:53219929-53220101	H1-hESC	embryonic stem cell:	n/a	n/a
35	CBX3	chr19:53226892-53227577	K562	blood:	n/a	n/a
36	CBX3	chr19:53269789-53270224	K562	blood:	n/a	n/a
37	CBX3	chr19:53238062-53238800	K562	blood:	n/a	n/a
38	CBX3	chr19:53228183-53229250	K562	blood:	n/a	n/a
39	CBX3	chr19:53238334-53238591	K562	blood:	n/a	n/a
40	CBX3	chr19:53269115-53269526	K562	blood:	n/a	n/a
41	CCNT2	chr19:53228944-53229189	K562	blood:	n/a	n/a
42	CCNT2	chr19:53237915-53238524	K562	blood:	n/a	chr19:53238372-53238381
43	CCNT2	chr19:53228300-53228706	K562	blood:	n/a	n/a
44	CEBPB	chr19:53212122-53212441	A549	lung:	n/a	chr19:53212306-53212319 chr19:53212308-53212319 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317
45	CEBPB	chr19:53212163-53212430	IMR90	lung:	n/a	chr19:53212306-53212319 chr19:53212308-53212319 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317
46	CEBPB	chr19:53232571-53232835	ECC-1	luminal epithelium:	n/a	n/a
47	CEBPB	chr19:53251834-53252142	H1-hESC	embryonic stem cell:	n/a	chr19:53251983-53251994
48	CEBPB	chr19:53251834-53252159	HepG2	liver:	n/a	chr19:53251983-53251994
49	CEBPB	chr19:53238741-53238842	K562	blood:	n/a	chr19:53238809-53238820
50	CEBPB	chr19:53212256-53212412	K562	blood:	n/a	chr19:53212306-53212319 chr19:53212308-53212319 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317 chr19:53212308-53212317

(count:1406 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53238434-53238484	HUVEC	blood vessel:	n/a
2	chr19:53238498-53238548	BE2_C	brain:	n/a
3	chr19:53225441-53225491	ovcar-3	ovarian:	n/a
4	chr19:53238434-53238484	HUVEC	blood vessel:	n/a
5	chr19:53238498-53238548	BE2_C	brain:	n/a
6	chr19:53225441-53225491	ovcar-3	ovarian:	n/a
7	chr19:53225441-53225491	NHDF-neo	bronchial:	n/a
8	chr19:53238337-53238387	LNCaP	prostate:	n/a
9	chr19:53238445-53238495	NHDF-neo	bronchial:	n/a
10	chr19:53238337-53238387	HL-60	blood:	n/a
11	chr19:53237862-53237912	HEEpiC	esophagus:	n/a
12	chr19:53239200-53239250	HRE	kidney:	n/a
13	chr19:53238492-53238542	T-47D	breast:	n/a
14	chr19:53238434-53238484	SK-N-SH_RA	brain:	n/a
15	chr19:53269486-53269536	HCF	heart:	n/a
16	chr19:53239146-53239196	HRE	kidney:	n/a
17	chr19:53228974-53229024	SKMC	muscle:	n/a
18	chr19:53238413-53238463	HUVEC	blood vessel:	n/a
19	chr19:53228974-53229024	HEK293	kidney:	embryo
20	chr19:53238492-53238542	AG04450	lung:	fetal
21	chr19:53228974-53229024	MCF-7	breast:	n/a
22	chr19:53239200-53239250	PrEC	prostate:	n/a
23	chr19:53234126-53234176	Hela-S3	cervix:	n/a
24	chr19:53238498-53238548	SKMC	muscle:	n/a
25	chr19:53238445-53238495	NH-A	brain:	n/a
26	chr19:53233368-53233418	SK-N-SH_RA	brain:	n/a
27	chr19:53229096-53229146	HRE	kidney:	n/a
28	chr19:53233245-53233295	HRCEpiC	kidney:	n/a
29	chr19:53269486-53269536	HIPEpiC	eye:	n/a
30	chr19:53233164-53233214	HEEpiC	esophagus:	n/a
31	chr19:53238445-53238495	SK-N-SH_RA	brain:	n/a
32	chr19:53233083-53233133	BE2_C	brain:	n/a
33	chr19:53238434-53238484	Caco-2	colon:	n/a
34	chr19:53239146-53239196	AG10803	skin:	n/a
35	chr19:53238254-53238304	HIPEpiC	eye:	n/a
36	chr19:53239200-53239250	PANC-1	pancreas:	n/a
37	chr19:53237871-53237921	T-47D	breast:	n/a
38	chr19:53238254-53238304	CMK	blood:	n/a
39	chr19:53239200-53239250	HCT-116	colon:	n/a
40	chr19:53233164-53233214	PrEC	prostate:	n/a
41	chr19:53233368-53233418	HEK293	kidney:	embryo
42	chr19:53229766-53229816	ovcar-3	ovarian:	n/a
43	chr19:53233245-53233295	NT2-D1	testis:	n/a
44	chr19:53229766-53229816	NT2-D1	testis:	n/a
45	chr19:53233245-53233295	ProgFib	skin:	n/a
46	chr19:53237862-53237912	ovcar-3	ovarian:	n/a
47	chr19:53237645-53237695	H1-hESC	embryonic stem cell:	embryo
48	chr19:53229766-53229816	GM12878	blood:	n/a
49	chr19:53269486-53269536	AoSMC	blood vessel:	n/a
50	chr19:53238337-53238387	SK-N-MC	brain:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
2	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
3	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
4	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
5	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
6	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
7	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
8	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
9	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
10	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
11	chr19:53236450..53239197-chr19:53240698..53243642,2	K562	blood:
12	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
13	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
14	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
15	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
16	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-5	chr19:53227124-53227242	NONHSAT067579
2	lnc-ZNF83-5	chr19:53224436-53224520	NONHSAT067580
3	lnc-ZNF83-5	chr19:53238254-53238326	NONHSAT067579
4	lnc-ZNF83-5	chr19:53238254-53238268	NONHSAT067580
5	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067580
6	lnc-ZNF83-5	chr19:53224406-53224520	NONHSAT067579
7	lnc-ZNF83-5	chr19:53226674-53227917	NONHSAT067581
8	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067579
9	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067579
10	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067580

No data

Variant related genes	Relation type
ZNF611	TF binding region
ZNF611	CpG island
ENSG00000100600	chromatin interactions
ENSG00000242779	chromatin interactions
ENSG00000213020	chromatin interactions
ENSG00000167766	chromatin interactions

Extended variants
information (count: 3487 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:3487 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140186743	chr19:53212347-53212348	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs528447930	chr19:53212349-53212350	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs546650759	chr19:53212352-53212353	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs11084178	chr19:53212361-53212362	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs532657044	chr19:53212371-53212372	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs149916305	chr19:53212419-53212420	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs145322084	chr19:53212440-53212441	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs116635476	chr19:53212520-53212521	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs114336405	chr19:53212559-53212560	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs566542770	chr19:53212566-53212567	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs533796270	chr19:53212595-53212596	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs559824690	chr19:53212600-53212601	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs532528513	chr19:53212608-53212609	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs149200219	chr19:53212613-53212614	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs547987950	chr19:53212642-53212643	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs577069631	chr19:53212684-53212685	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs113755190	chr19:53212689-53212690	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs550765237	chr19:53212697-53212698	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs555981078	chr19:53212718-53212719	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs574277711	chr19:53212727-53212728	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs146894317	chr19:53212766-53212767	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs12462692	chr19:53212782-53212783	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs11084179	chr19:53212814-53212815	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs12463163	chr19:53212821-53212822	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs571491983	chr19:53212864-53212865	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs373367217	chr19:53212871-53212872	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs532888888	chr19:53212882-53212883	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs544902734	chr19:53212903-53212904	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs371171664	chr19:53212906-53212907	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs34198141	chr19:53212923-53212924	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs11084181	chr19:53212924-53212925	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs575559624	chr19:53212963-53212964	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs113450583	chr19:53212969-53212970	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs377484404	chr19:53212981-53212982	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs150648594	chr19:53212982-53212983	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs552196780	chr19:53213089-53213090	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs555126119	chr19:53213099-53213100	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs573343557	chr19:53213104-53213105	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs368203232	chr19:53213115-53213116	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs556018177	chr19:53213126-53213127	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs202237710	chr19:53213166-53213167	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs566699978	chr19:53213192-53213193	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs182248777	chr19:53213244-53213245	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535284357	chr19:53213249-53213250	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs186665986	chr19:53213261-53213262	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs553511717	chr19:53213293-53213294	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs573293195	chr19:53213296-53213297	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs192591622	chr19:53213314-53213315	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs370323424	chr19:53213319-53213320	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs558953670	chr19:53213322-53213323	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1968 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53194800-53218800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:53202800-53217400	ZNF genes & repeats	Liver	Liver
3	chr19:53205600-53217400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:53206600-53217800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:53206600-53227200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:53206800-53214000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:53207200-53215400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:53207200-53217600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr19:53207200-53218800	Strong transcription	Placenta	Placenta
10	chr19:53207400-53214600	Weak transcription	Stomach Mucosa	stomach
11	chr19:53207400-53216400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:53207400-53219400	Strong transcription	Dnd41	blood
13	chr19:53207600-53216000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:53207800-53212400	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr19:53208000-53212400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:53208000-53212400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:53208000-53216400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
18	chr19:53208200-53219400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr19:53208400-53212400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr19:53208400-53216000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr19:53208400-53217400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:53208400-53218800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:53208600-53213200	Weak transcription	Pancreas	Pancrea
24	chr19:53208600-53213600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:53208600-53214000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr19:53208800-53213800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr19:53209000-53213000	Weak transcription	Brain Germinal Matrix	brain
28	chr19:53209400-53214600	Weak transcription	Fetal Brain Female	brain
29	chr19:53209400-53225800	Weak transcription	Hela-S3	cervix
30	chr19:53209600-53213200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr19:53209600-53218200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr19:53209600-53219200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr19:53209600-53219400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:53209600-53223800	Weak transcription	NHLF	lung
35	chr19:53209600-53224000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr19:53209600-53224000	Weak transcription	Right Ventricle	heart
37	chr19:53209800-53215200	Weak transcription	NH-A	brain
38	chr19:53210000-53212600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
39	chr19:53210200-53213200	Weak transcription	Brain Anterior Caudate	brain
40	chr19:53210200-53214000	Weak transcription	Brain Hippocampus Middle	brain
41	chr19:53210200-53214000	Strong transcription	Fetal Lung	lung
42	chr19:53210200-53218800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr19:53210200-53219000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr19:53210200-53223400	Weak transcription	Colonic Mucosa	Colon
45	chr19:53210200-53227000	Weak transcription	Fetal Heart	heart
46	chr19:53210400-53214600	Weak transcription	NHEK	skin
47	chr19:53210400-53215000	Weak transcription	Fetal Kidney	kidney
48	chr19:53210400-53215200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr19:53210400-53215200	Weak transcription	Colon Smooth Muscle	Colon
50	chr19:53210400-53215400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links