Variant report

Variant	esv3366077
Chromosome Location	chr12:50271779-50273252
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50270045..50272990-chr12:50279975..50282889,2	MCF-7	breast:
2	chr12:50261492..50264871-chr12:50267070..50272951,8	MCF-7	breast:
3	chr12:50272122..50274588-chr12:50280399..50282303,2	MCF-7	breast:

Extended variants
information (count: 203 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:203 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62648564	chr12:50271780-50271781	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs557729419	chr12:50271788-50271789	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs571293613	chr12:50271794-50271795	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs539373814	chr12:50271807-50271808	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs111203852	chr12:50271843-50271844	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs147485870	chr12:50271844-50271845	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs371944606	chr12:50271845-50271846	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs150190459	chr12:50271848-50271849	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs386762906	chr12:50271849-50271850	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs187481717	chr12:50271851-50271852	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs138878564	chr12:50271873-50271874	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs549608387	chr12:50271885-50271886	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs556880181	chr12:50271889-50271890	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs573472391	chr12:50271893-50271894	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs370518424	chr12:50271894-50271895	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs200899209	chr12:50271897-50271898	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs111068136	chr12:50271900-50271901	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs199901452	chr12:50271909-50271910	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200836862	chr12:50271933-50271934	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs201798453	chr12:50271937-50271938	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs111203854	chr12:50271938-50271939	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs111203855	chr12:50271960-50271961	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs145937058	chr12:50271968-50271969	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs373555454	chr12:50271971-50271972	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs369779774	chr12:50271980-50271981	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs372972173	chr12:50271995-50271996	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs377031179	chr12:50272001-50272002	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs369704890	chr12:50272014-50272015	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs148972719	chr12:50272046-50272047	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs370060758	chr12:50272053-50272054	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs570706187	chr12:50272054-50272055	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs62648565	chr12:50272063-50272064	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs141415132	chr12:50272074-50272075	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs558743836	chr12:50272091-50272092	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs147446036	chr12:50272094-50272095	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs377388172	chr12:50272095-50272096	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs145630848	chr12:50272137-50272138	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs376328534	chr12:50272143-50272144	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs549576129	chr12:50272148-50272149	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs117489336	chr12:50272152-50272153	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs117736116	chr12:50272154-50272155	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs146409634	chr12:50272155-50272156	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs111064881	chr12:50272160-50272161	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs146914644	chr12:50272170-50272171	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs142129827	chr12:50272175-50272176	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs373288905	chr12:50272178-50272179	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs111203858	chr12:50272181-50272182	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs62648566	chr12:50272194-50272195	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs551096203	chr12:50272199-50272200	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs375053272	chr12:50272200-50272201	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	18632612	CNVD
Follicular lymphoma	20505157	CNVD
Hepatocellular carcinoma	16750200	CNVD
Melanoma	18172304	CNVD
Metanephric adenoma	20802469	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	17661082	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Cancer	17160897	CNVD
Melanoma	20877625	CNVD
Cancer	20164919	CNVD

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50263800-50271800	Weak transcription	Pancreas	Pancrea
2	chr12:50266200-50275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:50267000-50275800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:50267000-50297000	Weak transcription	Right Atrium	heart
5	chr12:50268200-50276400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:50269000-50274800	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr12:50269200-50273200	Strong transcription	Brain Angular Gyrus	brain
8	chr12:50269200-50274600	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:50269400-50275400	Weak transcription	Fetal Stomach	stomach
10	chr12:50269800-50272000	Strong transcription	Brain Hippocampus Middle	brain
11	chr12:50270000-50276400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:50270800-50271800	Strong transcription	Brain Germinal Matrix	brain
13	chr12:50271200-50274600	Strong transcription	Brain Cingulate Gyrus	brain
14	chr12:50271400-50272200	Strong transcription	Fetal Brain Female	brain
15	chr12:50271400-50272200	ZNF genes & repeats	K562	blood
16	chr12:50271400-50274600	Strong transcription	Brain Anterior Caudate	brain
17	chr12:50271600-50271800	ZNF genes & repeats	Fetal Brain Male	brain
18	chr12:50271600-50271800	ZNF genes & repeats	Fetal Kidney	kidney
19	chr12:50271600-50274800	Strong transcription	Brain Substantia Nigra	brain
20	chr12:50271800-50272000	Enhancers	Pancreas	Pancrea
21	chr12:50271800-50273200	Strong transcription	Fetal Brain Male	brain
22	chr12:50271800-50273200	Weak transcription	Fetal Kidney	kidney
23	chr12:50271800-50274400	Weak transcription	Brain Germinal Matrix	brain
24	chr12:50272000-50273000	Weak transcription	Pancreas	Pancrea
25	chr12:50272000-50274400	Weak transcription	Brain Hippocampus Middle	brain
26	chr12:50272200-50273000	Weak transcription	Fetal Brain Female	brain
27	chr12:50272800-50273400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:50273000-50273400	Enhancers	Pancreas	Pancrea
29	chr12:50273000-50276400	Strong transcription	Fetal Brain Female	brain
30	chr12:50273200-50273600	ZNF genes & repeats	Brain Angular Gyrus	brain
31	chr12:50273200-50274600	ZNF genes & repeats	Fetal Kidney	kidney
32	chr12:50273200-50274600	Active TSS	Fetal Lung	lung
33	chr12:50273200-50275000	ZNF genes & repeats	Fetal Brain Male	brain

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