Variant report

Variant	esv3368098
Chromosome Location	chr7:126159882-126160265
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126154600-126176992..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo
2	7:126154600-126176992..7:127009457-127018926	H1-hESC	embryonic stem cell:	embryo
3	7:126154600-126176992..7:127221502-127225864	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000048405	chromatin interactions
ENSG00000179562	chromatin interactions
ENSG00000179603	chromatin interactions

Extended variants
information (count: 21 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549324991	chr7:126159927-126159928	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs535949070	chr7:126159934-126159935	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs554108368	chr7:126160002-126160003	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs190083600	chr7:126160028-126160029	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs149451684	chr7:126160038-126160039	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs10247952	chr7:126160058-126160059	Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs577114135	chr7:126160066-126160067	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs541176514	chr7:126160085-126160086	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs540532917	chr7:126160100-126160101	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs144179447	chr7:126160103-126160104	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs574951325	chr7:126160126-126160127	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs542366587	chr7:126160138-126160139	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs563801640	chr7:126160175-126160176	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs74698025	chr7:126160198-126160199	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs143379564	chr7:126160205-126160206	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs564798089	chr7:126160221-126160222	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs146231447	chr7:126160223-126160224	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs370869292	chr7:126160229-126160230	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs529416135	chr7:126160248-126160249	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs547129452	chr7:126160249-126160250	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs568328630	chr7:126160250-126160251	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Autism	20808228	CNVD
Autism	19246517	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Prostate cancer	22341455	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126157600-126170400	Weak transcription	Left Ventricle	heart

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