Variant report

Variant	esv3369752
Chromosome Location	chr20:25768102-25825800
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:237)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:237 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr20:25825481-25825754	GM12878	blood:	n/a	n/a
2	BCL11A	chr20:25775154-25775349	GM12878	blood:	n/a	n/a
3	BCL11A	chr20:25806118-25806338	GM12878	blood:	n/a	n/a
4	CEBPB	chr20:25775261-25775345	K562	blood:	n/a	n/a
5	CEBPB	chr20:25775210-25775358	K562	blood:	n/a	n/a
6	CTCF	chr20:25795732-25795758	Kidney_OC	kidney:	n/a	n/a
7	CTCF	chr20:25794267-25794381	HepG2	liver:	n/a	n/a
8	CTCF	chr20:25781501-25781579	LNCaP	prostate:	n/a	n/a
9	CTCF	chr20:25770956-25770960	Lung_OC	lung:	n/a	n/a
10	CTCF	chr20:25796859-25796949	GM10248	blood:	n/a	n/a
11	CTCF	chr20:25794235-25794416	MCF-7	breast:	n/a	n/a
12	CTCF	chr20:25809308-25809328	Spleen_OC	spleen:	n/a	n/a
13	CTCF	chr20:25794262-25794355	LNCaP	prostate:	n/a	n/a
14	CTCF	chr20:25776947-25777055	K562	blood:	n/a	n/a
15	CTCF	chr20:25794236-25794403	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr20:25794597-25794634	GM10248	blood:	n/a	n/a
17	CTCF	chr20:25806122-25806150	LNCaP	prostate:	n/a	n/a
18	CTCF	chr20:25794275-25794366	ProgFib	skin:	n/a	n/a
19	CTCF	chr20:25794237-25794387	K562	blood:	n/a	n/a
20	CTCF	chr20:25776869-25777062	K562	blood:	n/a	n/a
21	CTCF	chr20:25770966-25771003	Lung_OC	lung:	n/a	n/a
22	CTCF	chr20:25794293-25794310	GM12891	blood:	n/a	n/a
23	CTCF	chr20:25794226-25794394	MCF-7	breast:	n/a	n/a
24	CTCF	chr20:25794247-25794393	MCF-7	breast:	n/a	n/a
25	CTCF	chr20:25776862-25777134	K562	blood:	n/a	n/a
26	CTCF	chr20:25794281-25794392	Fibrobl	skin:	n/a	n/a
27	CTCF	chr20:25794254-25794393	MCF-7	breast:	n/a	n/a
28	CTCF	chr20:25813780-25813886	Medullo	brain:	n/a	n/a
29	CTCF	chr20:25794317-25794342	GM12891	blood:	n/a	n/a
30	CTCF	chr20:25812780-25812830	GM13976	blood:	n/a	n/a
31	CTCF	chr20:25794305-25794358	Medullo	brain:	n/a	n/a
32	CTCF	chr20:25794219-25794419	MCF-7	breast:	n/a	n/a
33	CTCF	chr20:25794245-25794362	A549	lung:	n/a	n/a
34	EBF1	chr20:25777479-25777661	GM12878	blood:	n/a	n/a
35	EP300	chr20:25775207-25775374	GM12878	blood:	n/a	n/a
36	EP300	chr20:25775090-25775420	GM12878	blood:	n/a	n/a
37	EP300	chr20:25816477-25816705	GM12878	blood:	n/a	n/a
38	EP300	chr20:25786611-25786906	GM12878	blood:	n/a	n/a
39	EP300	chr20:25811272-25811533	GM12878	blood:	n/a	n/a
40	FOSL2	chr20:25811121-25811619	HepG2	liver:	n/a	chr20:25811319-25811328
41	FOSL2	chr20:25825220-25825876	HepG2	liver:	n/a	chr20:25825584-25825595 chr20:25825846-25825853
42	FOSL2	chr20:25825268-25825858	HepG2	liver:	n/a	chr20:25825584-25825595 chr20:25825846-25825853
43	FOSL2	chr20:25776365-25776828	HepG2	liver:	n/a	n/a
44	FOSL2	chr20:25793817-25794382	HepG2	liver:	n/a	n/a
45	FOSL2	chr20:25768465-25768748	HepG2	liver:	n/a	n/a
46	FOSL2	chr20:25816430-25816686	HepG2	liver:	n/a	n/a
47	FOSL2	chr20:25776981-25777664	HepG2	liver:	n/a	n/a
48	FOSL2	chr20:25773157-25773477	HepG2	liver:	n/a	n/a
49	FOSL2	chr20:25804329-25804724	HepG2	liver:	n/a	n/a
50	FOSL2	chr20:25796654-25796983	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF337-3	chr20:25816621-25816715	NONHSAT079192
2	lnc-FAM182A-9	chr20:25795622-25796315	NONHSAT079191
3	lnc-FAM182A-9	chr20:25792905-25793903	NONHSAT079191
4	lnc-ZNF337-3	chr20:25817342-25817468	NONHSAT079192
5	lnc-FAM182B-8	chr20:25781456-25781927	NONHSAT079187

No data

Variant related genes	Relation type
ENSG00000250090	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199966136	chr20:25792909-25792910	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs113837467	chr20:25793211-25793212	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs185111205	chr20:25793393-25793394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs201286906	chr20:25795723-25795724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs202075464	chr20:25795752-25795753	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs6115308	chr20:25795774-25795775	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs28657382	chr20:25795961-25795962	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs187985259	chr20:25796027-25796028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs6138680	chr20:25796031-25796032	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs192901198	chr20:25796094-25796095	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs554027829	chr20:25817344-25817345	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs112805762	chr20:25817941-25817942	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs6115316	chr20:25819122-25819123	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs6115317	chr20:25819131-25819132	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs112556828	chr20:25820178-25820179	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs62214067	chr20:25820899-25820900	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs2263729	chr20:25821018-25821019	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs541853302	chr20:25821054-25821055	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs188610973	chr20:25821228-25821229	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs112622984	chr20:25821289-25821290	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs6132869	chr20:25824670-25824671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531741478	chr20:25824945-25824946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548753034	chr20:25825098-25825099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565674984	chr20:25825100-25825101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558801040	chr20:25825642-25825643	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs181381368	chr20:25825723-25825724	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs551472598	chr20:25825786-25825787	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25824600-25828800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr20:25825600-25825800	Active TSS	Stomach Smooth Muscle	stomach
3	chr20:25825800-25826000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:25825800-25826000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:25825800-25826000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:25825800-25826000	Enhancers	Aorta	Aorta
7	chr20:25825800-25826000	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr20:25825800-25826000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr20:25825800-25826000	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr20:25825800-25826000	Enhancers	Spleen	Spleen
11	chr20:25825800-25826000	Enhancers	HSMMtube	muscle
12	chr20:25825800-25826200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr20:25825800-25826200	Enhancers	Brain Angular Gyrus	brain
14	chr20:25825800-25826200	Enhancers	Brain Anterior Caudate	brain
15	chr20:25825800-25826200	Enhancers	Brain Cingulate Gyrus	brain
16	chr20:25825800-25826200	Enhancers	Brain Hippocampus Middle	brain
17	chr20:25825800-25826200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr20:25825800-25826200	Enhancers	Brain Substantia Nigra	brain
19	chr20:25825800-25826200	Enhancers	Psoas Muscle	Psoas
20	chr20:25825800-25826200	Enhancers	Right Ventricle	heart
21	chr20:25825800-25826200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links