Variant report

Variant	esv3377988
Chromosome Location	chr6:80563869-80564193
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:80563885-80564060	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000220918	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186606250	chr6:80563922-80563923	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs191469306	chr6:80563932-80563933	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs558668971	chr6:80563950-80563951	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs377091477	chr6:80563991-80563992	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs572208685	chr6:80564005-80564006	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs182459830	chr6:80564032-80564033	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs535924380	chr6:80564037-80564038	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs187883245	chr6:80564038-80564039	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs346288	chr6:80564049-80564050	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs193129162	chr6:80564069-80564070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544678687	chr6:80564100-80564101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs149120750	chr6:80564110-80564111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs346289	chr6:80564120-80564121	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs544954038	chr6:80564122-80564123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561445198	chr6:80564134-80564135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530364316	chr6:80564139-80564140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs10608956	chr6:80564142-80564143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs199664555	chr6:80564143-80564144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs540722051	chr6:80564148-80564149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs346290	chr6:80564183-80564184	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80558800-80570600	Weak transcription	Fetal Heart	heart

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