Variant report

Variant	esv3380301
Chromosome Location	chr10:26005549-26011700
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR158-4	chr10:26011456-26011580	NONHSAT011813
2	lnc-GPR158-2	chr10:26005674-26005910	NR_108067
3	lnc-GPR158-2	chr10:26005674-26005910	NONHSAT011808

Extended variants
information (count: 358 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:358 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556922981	chr10:26005569-26005570	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs375827652	chr10:26005574-26005575	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141443746	chr10:26005575-26005576	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577109358	chr10:26005582-26005583	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs545339418	chr10:26005588-26005589	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150887525	chr10:26005589-26005590	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10828861	chr10:26005615-26005616	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs532687705	chr10:26005622-26005623	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs147639017	chr10:26005637-26005638	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs36056276	chr10:26005646-26005647	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs570921077	chr10:26005673-26005674	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs11014706	chr10:26005712-26005713	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs552035641	chr10:26005713-26005714	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs185388188	chr10:26005721-26005722	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs537217498	chr10:26005723-26005724	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs190068078	chr10:26005724-26005725	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs11014707	chr10:26005749-26005750	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs11014708	chr10:26005755-26005756	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs11014709	chr10:26005772-26005773	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs59612300	chr10:26005779-26005780	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs538524604	chr10:26005786-26005787	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs11014710	chr10:26005787-26005788	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs58321696	chr10:26005835-26005836	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs3121792	chr10:26005836-26005837	Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs557433991	chr10:26005876-26005877	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs574049704	chr10:26005896-26005897	Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs558980525	chr10:26005916-26005917	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12359432	chr10:26005917-26005918	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs559764716	chr10:26005932-26005933	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs2442898	chr10:26005938-26005939	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs148371894	chr10:26005957-26005958	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527962853	chr10:26005978-26005979	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs531143374	chr10:26005984-26005985	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs564891934	chr10:26005992-26005993	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141534617	chr10:26006008-26006009	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs2442897	chr10:26006051-26006052	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs192842320	chr10:26006070-26006071	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150869438	chr10:26006091-26006092	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs2442896	chr10:26006122-26006123	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs184804106	chr10:26006135-26006136	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs2442895	chr10:26006145-26006146	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs538093732	chr10:26006173-26006174	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189267069	chr10:26006174-26006175	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181064511	chr10:26006199-26006200	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147378061	chr10:26006200-26006201	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs527311810	chr10:26006209-26006210	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547162029	chr10:26006210-26006211	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs2442894	chr10:26006222-26006223	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs371150045	chr10:26006231-26006232	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs35923622	chr10:26006245-26006246	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26005000-26009400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:26005400-26006200	Weak transcription	K562	blood
3	chr10:26005400-26011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:26006400-26006600	Enhancers	K562	blood
5	chr10:26007400-26007800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:26009400-26012000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:26010400-26010600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:26010800-26012000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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