Variant report

Variant	esv3403717
Chromosome Location	chr11:47055876-47060874
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47048648..47051358-chr11:47053601..47056863,3	K562	blood:

Extended variants
information (count: 152 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:152 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114584216	chr11:47055883-47055884	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs546542887	chr11:47056009-47056010	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs566366407	chr11:47056044-47056045	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs138336521	chr11:47056055-47056056	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs56188415	chr11:47056056-47056057	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75716899	chr11:47056068-47056069	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs398015982	chr11:47056070-47056071	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs551518328	chr11:47056079-47056080	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538657650	chr11:47056110-47056111	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs558213964	chr11:47056113-47056114	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs568651229	chr11:47056135-47056136	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs181497208	chr11:47056137-47056138	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs571402965	chr11:47056150-47056151	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs61896109	chr11:47056166-47056167	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs575035191	chr11:47056174-47056175	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs61896110	chr11:47056175-47056176	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs61896111	chr11:47056177-47056178	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs139115074	chr11:47056183-47056184	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs61896112	chr11:47056197-47056198	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs554105034	chr11:47056223-47056224	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs577143978	chr11:47056248-47056249	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs370894124	chr11:47056275-47056276	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs546262232	chr11:47056316-47056317	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs149900641	chr11:47056452-47056453	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs547747661	chr11:47056497-47056498	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs184102776	chr11:47056587-47056588	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs529490458	chr11:47056645-47056646	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs560942160	chr11:47056671-47056672	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs529974477	chr11:47056688-47056689	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs541520701	chr11:47056690-47056691	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs560430555	chr11:47056693-47056694	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs55960458	chr11:47056760-47056761	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs551800841	chr11:47056781-47056782	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs373061792	chr11:47056820-47056821	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs568565396	chr11:47056822-47056823	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs537554754	chr11:47056824-47056825	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145827289	chr11:47056875-47056876	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs371188977	chr11:47056883-47056884	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376612072	chr11:47056885-47056886	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs568579091	chr11:47056897-47056898	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs534429863	chr11:47056947-47056948	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs75847431	chr11:47056980-47056981	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577516618	chr11:47056990-47056991	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs112327253	chr11:47057002-47057003	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs7479189	chr11:47057009-47057010	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs188541423	chr11:47057106-47057107	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs542366541	chr11:47057190-47057191	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs562238408	chr11:47057238-47057239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536962574	chr11:47057248-47057249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574531208	chr11:47057310-47057311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Parathyroid adenoma	22454399	CNVD
Medulloblastoma	21979893	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17603634	CNVD
Chordoma	18071362	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
small cell lung cancer	20016488	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	18172304	CNVD
Intracranial ependymoma	16609018	CNVD
Myxofibrosarcoma	16751306	CNVD
Potocki-Shaffer syndrome	22470819	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	16608533	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Breast cancer	20409316	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47045800-47056600	Weak transcription	Hela-S3	cervix
4	chr11:47048800-47058000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:47050600-47056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
7	chr11:47055200-47057600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:47055200-47062000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:47055400-47058200	Weak transcription	NHDF-Ad	bronchial
10	chr11:47055400-47058800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:47055800-47056000	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:47055800-47057000	Enhancers	K562	blood
15	chr11:47056000-47056200	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr11:47056000-47056400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr11:47056000-47056600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr11:47056200-47058400	Weak transcription	Fetal Intestine Small	intestine
19	chr11:47056400-47073600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:47056600-47057200	ZNF genes & repeats	Hela-S3	cervix
21	chr11:47056600-47073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:47057000-47058600	Weak transcription	K562	blood
23	chr11:47057200-47074200	Weak transcription	Hela-S3	cervix
24	chr11:47058400-47058600	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr11:47058600-47058800	Enhancers	K562	blood
26	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine

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