Variant report

Variant	esv3407397
Chromosome Location	chr20:26097285-26099114
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr20:26097328-26097789	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
NCOR1P1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556762797	chr20:26097341-26097342	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs79423051	chr20:26097353-26097354	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs71332691	chr20:26097386-26097387	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs369430531	chr20:26097391-26097392	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs145395138	chr20:26097399-26097400	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs200099782	chr20:26097444-26097445	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs1937055	chr20:26097452-26097453	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs530789504	chr20:26097453-26097454	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs550318235	chr20:26097465-26097466	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs567217112	chr20:26097502-26097503	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs529759033	chr20:26097518-26097519	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs141638410	chr20:26097579-26097580	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs376838338	chr20:26097580-26097581	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs566212475	chr20:26097584-26097585	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs370682943	chr20:26097614-26097615	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs111388577	chr20:26097630-26097631	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs372939116	chr20:26097637-26097638	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs534927324	chr20:26097656-26097657	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs201977595	chr20:26097660-26097661	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs150581808	chr20:26097678-26097679	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs571850368	chr20:26097692-26097693	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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