Variant report

Variant	esv3409027
Chromosome Location	chr2:37745473-37748421
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37748014..37749874-chr2:37757456..37760173,2	MCF-7	breast:
2	chr2:37728444..37730701-chr2:37746195..37748553,2	MCF-7	breast:

Extended variants
information (count: 187 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:187 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556927586	chr2:37745508-37745509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs568872749	chr2:37745512-37745513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs536350677	chr2:37745534-37745535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs78874554	chr2:37745567-37745568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186180445	chr2:37745578-37745579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs35414311	chr2:37745606-37745607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs62135576	chr2:37745610-37745611	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs191637677	chr2:37745615-37745616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577854190	chr2:37745642-37745643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183551681	chr2:37745662-37745663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567494373	chr2:37745698-37745699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs553163602	chr2:37745714-37745715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553872097	chr2:37745766-37745767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs202149362	chr2:37745784-37745785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs7575743	chr2:37745785-37745786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs71437585	chr2:37745797-37745798	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs187980866	chr2:37745830-37745831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377524014	chr2:37745838-37745839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542761780	chr2:37745894-37745895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs11686382	chr2:37745901-37745902	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs576830708	chr2:37745924-37745925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs71398237	chr2:37745952-37745953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182659600	chr2:37745955-37745956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs114228967	chr2:37745979-37745980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546877856	chr2:37746028-37746029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571949791	chr2:37746048-37746049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574669160	chr2:37746059-37746060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs532675620	chr2:37746089-37746090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550816577	chr2:37746118-37746119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192828635	chr2:37746145-37746146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547088589	chr2:37746153-37746154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182646307	chr2:37746165-37746166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs72868540	chr2:37746240-37746241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566829499	chr2:37746262-37746263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191335323	chr2:37746263-37746264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552880285	chr2:37746276-37746277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs577869957	chr2:37746293-37746294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185044494	chr2:37746299-37746300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62135577	chr2:37746320-37746321	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs143595682	chr2:37746342-37746343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542626544	chr2:37746347-37746348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs147068768	chr2:37746393-37746394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572841932	chr2:37746400-37746401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540283161	chr2:37746411-37746412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72793802	chr2:37746427-37746428	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs532541106	chr2:37746433-37746434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547672556	chr2:37746482-37746483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs71414263	chr2:37746529-37746530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113151446	chr2:37746539-37746540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112257058	chr2:37746540-37746541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37743200-37749000	Weak transcription	Fetal Heart	heart
2	chr2:37744600-37751200	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links