Variant report

Variant	esv3417770
Chromosome Location	chr6:77670473-77963253
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:
2	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
3	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
4	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
5	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
6	chr6:77883269..77883819-chr6:78167410..78168146,2	MCF-7	breast:
7	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
8	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:
9	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
10	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77849239-77849469	NONHSAT113650
2	lnc-MYO6-3	chr6:77698014-77698599	XLOC_005355
3	lnc-MYO6-14	chr6:77861536-77861691	NONHSAT113655
4	lnc-MYO6-14	chr6:77860253-77860997	NONHSAT113655
5	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
6	lnc-MYO6-12	chr6:77798170-77801007	NONHSAT113653
7	lnc-HTR1B-2	chr6:77822661-77823096	XLOC_005768
8	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650
9	lnc-HTR1B-2	chr6:77860918-77860954	XLOC_005768
10	lnc-MYO6-15	chr6:77682889-77683422	NONHSAT113650
11	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes

No data

Variant related genes	Relation type
CHMP2B	miRNA target sites
EIF4G3	miRNA target sites
PRKD3	miRNA target sites

Extended variants
information (count: 6908 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:6908 , 50 per page) page: 1 2 3 4 5 6 7 ... 139

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375703666	chr6:77675410-77675411	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs180959697	chr6:77675414-77675415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs141517102	chr6:77675433-77675434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541517512	chr6:77675437-77675438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs150548654	chr6:77675463-77675464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs527943609	chr6:77675469-77675470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs546399851	chr6:77675517-77675518	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs185195722	chr6:77675520-77675521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs533453887	chr6:77675521-77675522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs551517009	chr6:77675532-77675533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs56169606	chr6:77675635-77675636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs117271269	chr6:77675650-77675651	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs549909130	chr6:77675767-77675768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs568195200	chr6:77675847-77675848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs190296768	chr6:77675858-77675859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs531249669	chr6:77675861-77675862	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs547441983	chr6:77675895-77675896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565988689	chr6:77675923-77675924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539310100	chr6:77675973-77675974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs80172184	chr6:77681810-77681811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs140248339	chr6:77681832-77681833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs376289518	chr6:77681834-77681835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs530299341	chr6:77681838-77681839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs542410401	chr6:77681867-77681868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs534070913	chr6:77681872-77681873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs114875242	chr6:77681941-77681942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs1414184	chr6:77681968-77681969	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs552298429	chr6:77681988-77681989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs570588757	chr6:77682046-77682047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs531630840	chr6:77682059-77682060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs576930999	chr6:77682064-77682065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs549730664	chr6:77682103-77682104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs112342449	chr6:77682152-77682153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs71792729	chr6:77682154-77682155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs568017288	chr6:77682160-77682161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs550508636	chr6:77682218-77682219	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs535347191	chr6:77682222-77682223	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs554024896	chr6:77682231-77682232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376083650	chr6:77682257-77682258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs539596951	chr6:77682301-77682302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs557538988	chr6:77682341-77682342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs369438349	chr6:77682358-77682359	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs323260	chr6:77682370-77682371	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs150600761	chr6:77682374-77682375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs79232101	chr6:77682409-77682410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs555357474	chr6:77682470-77682471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs200328727	chr6:77682518-77682519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs186604561	chr6:77682578-77682579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs190929824	chr6:77682601-77682602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs560838643	chr6:77682623-77682624	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:348 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77675400-77676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:77681800-77682400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:77682000-77682400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:77682000-77682800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:77682000-77683000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:77682200-77682800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:77682400-77682800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:77682600-77683000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:77691000-77692600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:77691400-77691600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:77692600-77692800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:77692800-77693600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:77698200-77699000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:77699000-77703400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:77702400-77702600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:77711400-77711800	Enhancers	Fetal Heart	heart
17	chr6:77721000-77722200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:77724600-77725400	Enhancers	Brain Germinal Matrix	brain
19	chr6:77725000-77725200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:77725000-77725200	Enhancers	Liver	Liver
21	chr6:77725000-77725400	Enhancers	HSMM	muscle
22	chr6:77725200-77726800	Weak transcription	Liver	Liver
23	chr6:77725200-77736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:77726800-77728200	Enhancers	Liver	Liver
25	chr6:77728200-77731000	Weak transcription	Liver	Liver
26	chr6:77731000-77731400	Enhancers	Liver	Liver
27	chr6:77731400-77731800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:77735600-77736000	Enhancers	Osteobl	bone
29	chr6:77736000-77736600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:77736000-77737000	Enhancers	Hela-S3	cervix
31	chr6:77736000-77740800	Weak transcription	Osteobl	bone
32	chr6:77736200-77736600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:77736600-77743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:77740400-77740800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:77740400-77741200	Enhancers	HSMM	muscle
36	chr6:77740600-77741200	Active TSS	Liver	Liver
37	chr6:77740800-77741200	Enhancers	HSMMtube	muscle
38	chr6:77740800-77741200	Enhancers	Osteobl	bone
39	chr6:77740800-77741400	Enhancers	HMEC	breast
40	chr6:77740800-77743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:77741000-77741200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:77741200-77742600	Weak transcription	HSMMtube	muscle
43	chr6:77741200-77743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:77741200-77743400	Weak transcription	HSMM	muscle
45	chr6:77741200-77743600	Weak transcription	Osteobl	bone
46	chr6:77741400-77743000	Weak transcription	HMEC	breast
47	chr6:77742600-77742800	Enhancers	HSMMtube	muscle
48	chr6:77742600-77746000	Weak transcription	Pancreas	Pancrea
49	chr6:77742800-77743200	Weak transcription	HSMMtube	muscle
50	chr6:77743000-77743400	Enhancers	NH-A	brain

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