Variant report

Variant	esv3420944
Chromosome Location	chr8:58294048-58296546
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-12	chr8:58296477-58297270	l_3602_chr8:58277926-58304841_testes
2	lnc-FAM110B-12	chr8:58295172-58295408	l_3602_chr8:58277926-58304841_testes
3	lnc-FAM110B-12	chr8:58293308-58294764	l_3602_chr8:58277926-58304841_testes

Extended variants
information (count: 81 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6981437	chr8:58294054-58294055	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs184697514	chr8:58294082-58294083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs576605898	chr8:58294097-58294098	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs555097387	chr8:58294111-58294112	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs535659180	chr8:58294126-58294127	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs55960888	chr8:58294130-58294131	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs571780331	chr8:58294162-58294163	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs188953617	chr8:58294173-58294174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs563699332	chr8:58294220-58294221	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs138607512	chr8:58294234-58294235	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs566024325	chr8:58294252-58294253	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs543745755	chr8:58294269-58294270	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs563413150	chr8:58294292-58294293	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs6982211	chr8:58294313-58294314	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs548867639	chr8:58294317-58294318	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs80009429	chr8:58294328-58294329	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs115074900	chr8:58294329-58294330	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs547820065	chr8:58294339-58294340	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs181504973	chr8:58294349-58294350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs539822596	chr8:58294354-58294355	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs58822276	chr8:58294435-58294436	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs550487010	chr8:58294463-58294464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs142692476	chr8:58294484-58294485	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs6986207	chr8:58294520-58294521	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs6985947	chr8:58294532-58294533	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs571818998	chr8:58294578-58294579	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs117827201	chr8:58294625-58294626	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs112014322	chr8:58294645-58294646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs137989087	chr8:58294655-58294656	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs73683833	chr8:58294663-58294664	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs117974251	chr8:58294685-58294686	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs527487672	chr8:58294688-58294689	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs574603873	chr8:58294689-58294690	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs191075549	chr8:58294699-58294700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs57744550	chr8:58294704-58294705	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs181225215	chr8:58294748-58294749	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs56121699	chr8:58294750-58294751	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs114282209	chr8:58294763-58294764	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs372671174	chr8:58295180-58295181	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs376868573	chr8:58295183-58295184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs369934823	chr8:58295191-58295192	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs374069937	chr8:58295196-58295197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs13253996	chr8:58295198-58295199	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs377722401	chr8:58295199-58295200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs372963981	chr8:58295200-58295201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs550255882	chr8:58295205-58295206	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs562394453	chr8:58295210-58295211	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs529802908	chr8:58295213-58295214	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs371045722	chr8:58295216-58295217	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs7460497	chr8:58295217-58295218	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Recurrent pregnancy loss	19789632	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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