Variant report

Variant	esv3430047
Chromosome Location	chr13:67551951-67554049
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL445989.1-15	chr13:67552505-67552603	ENSG00000225263.1
2	lnc-AL445989.1-15	chr13:67552505-67552603	NONHSAT034215

Extended variants
information (count: 75 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:75 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557389278	chr13:67551994-67551995	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs374888075	chr13:67552006-67552007	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs571621641	chr13:67552008-67552009	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs369455034	chr13:67552011-67552012	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569770930	chr13:67552031-67552032	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535671476	chr13:67552083-67552084	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373030574	chr13:67552094-67552095	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534064320	chr13:67552162-67552163	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572051617	chr13:67552168-67552169	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540926027	chr13:67552225-67552226	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557336262	chr13:67552229-67552230	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs140923303	chr13:67552263-67552264	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74347856	chr13:67552374-67552375	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563369543	chr13:67552450-67552451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs201096668	chr13:67552478-67552479	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs573638959	chr13:67552488-67552489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs543246095	chr13:67552494-67552495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs559985242	chr13:67552520-67552521	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs80085588	chr13:67552535-67552536	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs552060563	chr13:67552545-67552546	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs565293687	chr13:67552570-67552571	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs146457043	chr13:67552596-67552597	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs550681411	chr13:67552611-67552612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs189802689	chr13:67552622-67552623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs1323925	chr13:67552628-67552629	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs550677465	chr13:67552654-67552655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565492056	chr13:67552769-67552770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534615141	chr13:67552796-67552797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182256203	chr13:67552804-67552805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs371089856	chr13:67552833-67552834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577241764	chr13:67552894-67552895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs36023734	chr13:67552947-67552948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs202078861	chr13:67552948-67552949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs77141045	chr13:67552952-67552953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112020809	chr13:67552982-67552983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556673725	chr13:67553001-67553002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573725375	chr13:67553003-67553004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542310832	chr13:67553054-67553055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559995710	chr13:67553067-67553068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141656473	chr13:67553078-67553079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10871010	chr13:67553119-67553120	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs565603732	chr13:67553124-67553125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187359477	chr13:67553136-67553137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550997234	chr13:67553173-67553174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs191741876	chr13:67553181-67553182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183625246	chr13:67553193-67553194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs147076165	chr13:67553211-67553212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565555808	chr13:67553226-67553227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs534482402	chr13:67553231-67553232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs59220721	chr13:67553287-67553288	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Schizophrenia	23813976	CNVD
Prostate cancer	22341455	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67551000-67552400	Enhancers	Brain Angular Gyrus	brain
2	chr13:67551400-67552000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:67551400-67552200	Enhancers	Brain Substantia Nigra	brain
4	chr13:67551400-67552600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr13:67551800-67566200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:67552200-67557000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links