Variant report

Variant	esv3440004
Chromosome Location	chr7:58019010-58023608
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 877 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:877 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574635622	chr7:58019016-58019017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs202083566	chr7:58019020-58019021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs561941653	chr7:58019036-58019037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs553930224	chr7:58019039-58019040	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs139166804	chr7:58019045-58019046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs531137451	chr7:58019049-58019050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs564835621	chr7:58019058-58019059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs8185482	chr7:58019061-58019062	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs200855975	chr7:58019062-58019063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs113129176	chr7:58019070-58019071	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs201684834	chr7:58019079-58019080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs200001920	chr7:58019081-58019082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs147705867	chr7:58019118-58019119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs562274841	chr7:58019128-58019129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs201336961	chr7:58019132-58019133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs529459560	chr7:58019145-58019146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs112215830	chr7:58019148-58019149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs188450856	chr7:58019154-58019155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs115883090	chr7:58019160-58019161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs547192453	chr7:58019170-58019171	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs551239673	chr7:58019171-58019172	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs116272442	chr7:58019180-58019181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs551071485	chr7:58019187-58019188	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs569983615	chr7:58019197-58019198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs377159727	chr7:58019208-58019209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs548827072	chr7:58019210-58019211	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs567128725	chr7:58019234-58019235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs201970548	chr7:58019238-58019239	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs371328560	chr7:58019240-58019241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs534482663	chr7:58019246-58019247	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs111980628	chr7:58019248-58019249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs77811450	chr7:58019255-58019256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs554257977	chr7:58019266-58019267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs368614640	chr7:58019276-58019277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs76069405	chr7:58019286-58019287	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs78744851	chr7:58019288-58019289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs80069881	chr7:58019294-58019295	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs566026329	chr7:58019298-58019299	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs201799938	chr7:58019303-58019304	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs557856715	chr7:58019334-58019335	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs73121311	chr7:58019349-58019350	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs544129220	chr7:58019350-58019351	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs143837041	chr7:58019370-58019371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs200349052	chr7:58019378-58019379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs78471766	chr7:58019391-58019392	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs372781640	chr7:58019392-58019393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs148134305	chr7:58019402-58019403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs192840756	chr7:58019409-58019410	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs140681105	chr7:58019424-58019425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs116739744	chr7:58019430-58019431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Wilms tumour	21544195	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Medulloblastoma	21163964	CNVD
head and neck squamous cell carcinoma	17671120	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58007800-58021800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:58010600-58022200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:58012000-58019600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr7:58012800-58021800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr7:58021200-58021800	ZNF genes & repeats	Liver	Liver
6	chr7:58021400-58021600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr7:58021400-58021800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr7:58021400-58021800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr7:58021800-58026400	Weak transcription	Liver	Liver
10	chr7:58022400-58026400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:58023200-58023600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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