Variant report

Variant	esv3445664
Chromosome Location	chr20:26071552-26086050
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-4	chr20:26073445-26073683	ENSG00000125804.9
2	lnc-FAM182A-4	chr20:26072148-26072255	ENSG00000125804.9

Extended variants
information (count: 183 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:183 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201879572	chr20:26072156-26072157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs575138670	chr20:26072168-26072169	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs201228551	chr20:26072169-26072170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs201505834	chr20:26072171-26072172	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs543992943	chr20:26072173-26072174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs113860496	chr20:26072181-26072182	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs200318662	chr20:26072199-26072200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs561000532	chr20:26072217-26072218	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs529737140	chr20:26072229-26072230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs6138789	chr20:26072248-26072249	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
11	rs141693243	chr20:26072253-26072254	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs570241868	chr20:26073457-26073458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs6132919	chr20:26073480-26073481	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
14	rs559148712	chr20:26073485-26073486	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs79462922	chr20:26073487-26073488	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs75192218	chr20:26073516-26073517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs374700437	chr20:26073526-26073527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs6115516	chr20:26073561-26073562	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs544895065	chr20:26073580-26073581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs564534151	chr20:26073589-26073590	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs2996701	chr20:26073621-26073622	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs367839590	chr20:26073639-26073640	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs554939325	chr20:26073645-26073646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs397835052	chr20:26073652-26073653	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs75345480	chr20:26073653-26073654	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs540657155	chr20:26073670-26073671	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs201391122	chr20:26073674-26073675	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs553141756	chr20:26078812-26078813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs75820728	chr20:26078834-26078835	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs113618308	chr20:26078835-26078836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs573528296	chr20:26078847-26078848	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs6115518	chr20:26078848-26078849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs374594381	chr20:26078857-26078858	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs565290906	chr20:26078862-26078863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs77685124	chr20:26078863-26078864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs544738662	chr20:26078864-26078865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs561393487	chr20:26078875-26078876	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs76224046	chr20:26078885-26078886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs4625987	chr20:26078895-26078896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs370091142	chr20:26078896-26078897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs200791760	chr20:26078908-26078909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs369041281	chr20:26078911-26078912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs372962132	chr20:26078914-26078915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs376971560	chr20:26078916-26078917	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs369991483	chr20:26078919-26078920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs373414488	chr20:26078924-26078925	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs376300843	chr20:26078926-26078927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs546854403	chr20:26078932-26078933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs566542317	chr20:26078943-26078944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs5002991	chr20:26078944-26078945	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26078800-26080200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr20:26079600-26079800	ZNF genes & repeats	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links