Variant report

Variant	esv3450541
Chromosome Location	chr3:25168848-25172646
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 165 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:165 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539019290	chr3:25169205-25169206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs559624121	chr3:25169222-25169223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs183763375	chr3:25169226-25169227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs112788414	chr3:25169297-25169298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs1587422	chr3:25169306-25169307	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs186185908	chr3:25169333-25169334	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs549861045	chr3:25169335-25169336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs1587423	chr3:25169347-25169348	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs533159195	chr3:25169370-25169371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs145021907	chr3:25169422-25169423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs553424134	chr3:25169431-25169432	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs4485683	chr3:25169447-25169448	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs535012787	chr3:25169479-25169480	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs555030428	chr3:25169531-25169532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs568550429	chr3:25169533-25169534	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs537115836	chr3:25169536-25169537	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs397877754	chr3:25169542-25169543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs4558719	chr3:25169571-25169572	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs577321190	chr3:25169596-25169597	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs116699569	chr3:25169598-25169599	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs573249602	chr3:25169683-25169684	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs540605708	chr3:25169714-25169715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs372239864	chr3:25169793-25169794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs191581643	chr3:25169803-25169804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs529712606	chr3:25169840-25169841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs118053245	chr3:25169853-25169854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs36074827	chr3:25169866-25169867	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs529453447	chr3:25169923-25169924	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs563404604	chr3:25169949-25169950	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs146910311	chr3:25169968-25169969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs532196741	chr3:25169971-25169972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs111384451	chr3:25169978-25169979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs112956938	chr3:25169979-25169980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs200662958	chr3:25170133-25170134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs34725896	chr3:25170134-25170135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs1603973	chr3:25170135-25170136	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs573682400	chr3:25170172-25170173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs548520441	chr3:25170173-25170174	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs79633735	chr3:25170182-25170183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs555895351	chr3:25170192-25170193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs375040841	chr3:25170225-25170226	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs139012106	chr3:25170253-25170254	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs570967010	chr3:25170264-25170265	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs539643209	chr3:25170276-25170277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs141590064	chr3:25170300-25170301	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs73049923	chr3:25170319-25170320	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs542087939	chr3:25170335-25170336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs150451230	chr3:25170354-25170355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs114692597	chr3:25170378-25170379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs375121514	chr3:25170381-25170382	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	17327916	CNVD
Glioblastoma multiforme	21080181	CNVD
Neuroblastoma	18923191	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
lymphocytic leukemia	21291569	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Esophageal cancer	20955586	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	17550852	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25169200-25171600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:25169600-25169800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr3:25171800-25173600	Enhancers	Fetal Stomach	stomach
4	chr3:25172000-25172600	Enhancers	Fetal Lung	lung
5	chr3:25172600-25173000	Flanking Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links