Variant report

Variant	esv3472610
Chromosome Location	chr6:55261892-55262458
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557896637	chr6:55261905-55261906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183856504	chr6:55261957-55261958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs543755734	chr6:55261984-55261985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11754591	chr6:55262003-55262004	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs369739526	chr6:55262004-55262005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571027579	chr6:55262023-55262024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs56849733	chr6:55262024-55262025	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs188973160	chr6:55262038-55262039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563385466	chr6:55262055-55262056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559905913	chr6:55262060-55262061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576828903	chr6:55262082-55262083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs4715540	chr6:55262109-55262110	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs372443861	chr6:55262111-55262112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs574230600	chr6:55262139-55262140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs13214564	chr6:55262184-55262185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528559802	chr6:55262221-55262222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550594082	chr6:55262302-55262303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs70986715	chr6:55262348-55262349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs79093915	chr6:55262349-55262350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs11752527	chr6:55262375-55262376	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs114196905	chr6:55262407-55262408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs9396087	chr6:55262428-55262429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs556340110	chr6:55262451-55262452	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55261000-55262400	Weak transcription	Fetal Heart	heart
2	chr6:55262400-55263000	Enhancers	Fetal Heart	heart
3	chr6:55262400-55263200	Enhancers	Fetal Stomach	stomach

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