Variant report

Variant	esv3475142
Chromosome Location	chr6:80592789-80679132
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:759)
CpG islands
(count:1161)
Chromatin interactive
region (count:24)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:5)

(count:759 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:80658906-80659220	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:80658922-80659230	K562	blood:	n/a	n/a
3	ATF3	chr6:80657155-80657502	H1-hESC	embryonic stem cell:	n/a	chr6:80657435-80657444
4	ATF3	chr6:80657092-80657471	H1-hESC	embryonic stem cell:	n/a	chr6:80657435-80657444
5	BACH1	chr6:80657510-80657774	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr6:80656160-80656164	GM12878	blood:	n/a	n/a
7	CEBPB	chr6:80618685-80618947	HepG2	liver:	n/a	n/a
8	CEBPB	chr6:80648504-80648804	A549	lung:	n/a	n/a
9	CEBPB	chr6:80641842-80641908	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr6:80641755-80641969	H1-hESC	embryonic stem cell:	n/a	n/a
11	CEBPB	chr6:80615093-80615366	A549	lung:	n/a	n/a
12	CEBPB	chr6:80641734-80641960	K562	blood:	n/a	n/a
13	CEBPB	chr6:80607922-80608110	A549	lung:	n/a	chr6:80607965-80607974
14	CEBPB	chr6:80615042-80615382	HepG2	liver:	n/a	n/a
15	CEBPB	chr6:80641708-80641991	A549	lung:	n/a	n/a
16	CEBPB	chr6:80641718-80642010	HepG2	liver:	n/a	n/a
17	CEBPB	chr6:80648140-80648842	HepG2	liver:	n/a	chr6:80648465-80648477
18	CEBPB	chr6:80603363-80603684	HepG2	liver:	n/a	n/a
19	CEBPB	chr6:80615099-80615310	K562	blood:	n/a	n/a
20	CEBPB	chr6:80615111-80615341	IMR90	lung:	n/a	n/a
21	CEBPB	chr6:80648534-80648827	IMR90	lung:	n/a	n/a
22	CEBPB	chr6:80617010-80617251	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:80641683-80642030	IMR90	lung:	n/a	n/a
24	CEBPB	chr6:80648544-80648836	H1-hESC	embryonic stem cell:	n/a	n/a
25	CHD2	chr6:80657183-80657755	H1-hESC	embryonic stem cell:	n/a	n/a
26	CREB1	chr6:80657124-80657494	A549	lung:	n/a	n/a
27	CREB1	chr6:80657019-80657708	H1-hESC	embryonic stem cell:	n/a	n/a
28	CREB1	chr6:80657048-80657737	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTBP2	chr6:80656206-80657733	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr6:80656100-80656250	A549	lung:	n/a	chr6:80656159-80656180
31	CTCF	chr6:80656099-80656228	GM10266	blood:	n/a	chr6:80656159-80656180
32	CTCF	chr6:80656575-80656620	GM12891	blood:	n/a	n/a
33	CTCF	chr6:80658940-80659090	GM12878	blood:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
34	CTCF	chr6:80656100-80656250	BE2_C	brain:	n/a	chr6:80656159-80656180
35	CTCF	chr6:80658980-80659130	AG09309	skin:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
36	CTCF	chr6:80656141-80656266	GM12892	blood:	n/a	chr6:80656159-80656180
37	CTCF	chr6:80638420-80638570	GM12873	blood:	n/a	n/a
38	CTCF	chr6:80658940-80659090	HCT-116	colon:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
39	CTCF	chr6:80658980-80659130	GM12874	blood:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
40	CTCF	chr6:80658960-80659110	WERI-Rb-1	eye:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
41	CTCF	chr6:80656080-80656230	HCM	heart:	n/a	chr6:80656159-80656180
42	CTCF	chr6:80656780-80656930	GM12871	blood:	n/a	chr6:80656836-80656846
43	CTCF	chr6:80658980-80659130	K562	blood:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
44	CTCF	chr6:80658872-80659245	H1-hESC	embryonic stem cell:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
45	CTCF	chr6:80658960-80659110	HRE	kidney:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
46	CTCF	chr6:80658960-80659110	GM12878	blood:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
47	CTCF	chr6:80656060-80656210	GM12874	blood:	n/a	chr6:80656159-80656180
48	CTCF	chr6:80658920-80659070	GM12872	blood:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
49	CTCF	chr6:80658960-80659110	HPF	lung:	n/a	chr6:80659035-80659053 chr6:80659037-80659058
50	CTCF	chr6:80656060-80656210	AG10803	skin:	n/a	chr6:80656159-80656180

(count:1161 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:80657436-80657486	ProgFib	skin:	n/a
2	chr6:80656888-80656938	HAEpiC	amniotic membrane:	n/a
3	chr6:80657436-80657486	ProgFib	skin:	n/a
4	chr6:80656888-80656938	HAEpiC	amniotic membrane:	n/a
5	chr6:80657428-80657478	HUVEC	blood vessel:	n/a
6	chr6:80621222-80621272	SK-N-SH	brain:	n/a
7	chr6:80657415-80657465	MCF10A-Er-Src	breast:	n/a
8	chr6:80656586-80656636	HepG2	liver:	n/a
9	chr6:80657436-80657486	T-47D	breast:	n/a
10	chr6:80657542-80657592	HEEpiC	esophagus:	n/a
11	chr6:80657193-80657243	HepG2	liver:	n/a
12	chr6:80657430-80657480	BJ	skin:	n/a
13	chr6:80655418-80655468	Caco-2	colon:	n/a
14	chr6:80657436-80657486	AG04450	lung:	fetal
15	chr6:80657415-80657465	IMR90	lung:	fetal
16	chr6:80657193-80657243	HIPEpiC	eye:	n/a
17	chr6:80657542-80657592	AoSMC	blood vessel:	n/a
18	chr6:80657428-80657478	RPTEC	kidney:	n/a
19	chr6:80656973-80657023	AG09319	gingival:	n/a
20	chr6:80657436-80657486	Jurkat	blood:	n/a
21	chr6:80657826-80657876	GM12892	blood:	n/a
22	chr6:80656888-80656938	NH-A	brain:	n/a
23	chr6:80657415-80657465	HEEpiC	esophagus:	n/a
24	chr6:80657542-80657592	HIPEpiC	eye:	n/a
25	chr6:80657412-80657462	HCF	heart:	n/a
26	chr6:80657430-80657480	HCPEpiC	choroid plexus:	n/a
27	chr6:80656754-80656804	H1-hESC	embryonic stem cell:	embryo
28	chr6:80656754-80656804	MCF10A-Er-Src	breast:	n/a
29	chr6:80645827-80645877	GM19239	blood:	n/a
30	chr6:80621222-80621272	PrEC	prostate:	n/a
31	chr6:80655418-80655468	ovcar-3	ovarian:	n/a
32	chr6:80657428-80657478	GM12892	blood:	n/a
33	chr6:80645827-80645877	PrEC	prostate:	n/a
34	chr6:80654763-80654813	Hela-S3	cervix:	n/a
35	chr6:80657555-80657605	MCF10A-Er-Src	breast:	n/a
36	chr6:80651943-80651993	HCM	heart:	n/a
37	chr6:80657555-80657605	GM12891	blood:	n/a
38	chr6:80656973-80657023	GM12878	blood:	n/a
39	chr6:80657193-80657243	ProgFib	skin:	n/a
40	chr6:80657428-80657478	A549	lung:	n/a
41	chr6:80656586-80656636	MCF-7	breast:	n/a
42	chr6:80657193-80657243	HRPEpiC	eye:	n/a
43	chr6:80645827-80645877	IMR90	lung:	fetal
44	chr6:80657555-80657605	U87	brain:	n/a
45	chr6:80657436-80657486	MCF10A-Er-Src	breast:	n/a
46	chr6:80645827-80645877	K562	blood:	n/a
47	chr6:80651943-80651993	GM12878	blood:	n/a
48	chr6:80656595-80656645	HRPEpiC	eye:	n/a
49	chr6:80656586-80656636	HCF	heart:	n/a
50	chr6:80645827-80645877	HPAEpiC	pulmonary alveolar:	n/a

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:80638236..80641054-chr6:80645863..80647445,2	K562	blood:
2	chr6:80646006..80648770-chr6:80649212..80651183,2	MCF-7	breast:
3	chr6:80658533..80659818-chr6:80802938..80804495,11	MCF-7	breast:
4	chr6:80637867..80639718-chr6:80655961..80657818,2	K562	blood:
5	chr6:80646889..80649492-chr6:80650023..80652919,2	K562	blood:
6	chr6:80656144..80658220-chr6:80712686..80714230,2	K562	blood:
7	chr6:80602215..80604082-chr6:80917282..80919253,2	K562	blood:
8	chr1:149858428..149860800-chr6:80655814..80658112,2	MCF-7	breast:
9	chr6:80646889..80649492-chr6:80650023..80652919,2	K562	blood:
10	chr6:80658511..80659143-chr6:80803528..80804503,2	K562	blood:
11	chr6:80646006..80648770-chr6:80649212..80651183,2	MCF-7	breast:
12	chr6:80649918..80652477-chr6:80718505..80720470,2	K562	blood:
13	chr6:80657745..80660049-chr6:80716512..80719051,2	MCF-7	breast:
14	chr6:80658835..80659700-chr6:80713034..80713810,2	MCF-7	breast:
15	chr6:80637410..80640151-chr6:80643092..80644970,2	K562	blood:
16	chr6:80654201..80657156-chr6:80707214..80709323,2	MCF-7	breast:
17	chr6:80659127..80661422-chr6:80663652..80666036,2	K562	blood:
18	chr6:80658870..80659475-chr6:80804226..80804935,2	MCF-7	breast:
19	chr6:80638236..80641054-chr6:80645863..80647445,2	K562	blood:
20	chr6:80658920..80659483-chr6:80801274..80801876,2	K562	blood:
21	chr6:80653198..80656160-chr6:80712595..80714599,2	MCF-7	breast:
22	chr6:80637410..80640151-chr6:80643092..80644970,2	K562	blood:
23	chr6:80614921..80617147-chr6:80617384..80618992,2	MCF-7	breast:
24	chr6:80614921..80617147-chr6:80617384..80618992,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTK-2	chr6:80673932-80674236	NONHSAT113719
2	lnc-TTK-3	chr6:80638309-80638322	NONHSAT113717
3	lnc-TTK-3	chr6:80640736-80641046	NONHSAT113717

No data

(count:5 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ELOVL4	hsa-miR-19b-3p	chr6:80624699-80624722
2	ELOVL4	hsa-miR-19b-3p	chr6:80625850-80625872
3	ELOVL4	hsa-miR-30b-5p	chr6:80624946-80624968
4	ELOVL4	hsa-miR-21-5p	chr6:80624779-80624804
5	ELOVL4	hsa-miR-30c-5p	chr6:80624946-80624969

Variant related genes	Relation type
ELOVL4	TF binding region
RPL35AP18	TF binding region
GAPDHP63	TF binding region
ELOVL4	CpG island
RPL35AP18	CpG island
GAPDHP63	CpG island
ENSG00000218582	chromatin interactions
ENSG00000118402	chromatin interactions
ENSG00000112742	chromatin interactions
ENSG00000184270	chromatin interactions
ENSG00000178096	chromatin interactions
ENSG00000184260	chromatin interactions

Extended variants
information (count: 2982 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:2982 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551398462	chr6:80592823-80592824	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs138692101	chr6:80592839-80592840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs554899551	chr6:80592864-80592865	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs113029445	chr6:80592893-80592894	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs141139743	chr6:80592895-80592896	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs146945088	chr6:80592935-80592936	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs568126005	chr6:80592961-80592962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs527505319	chr6:80592970-80592971	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs571474478	chr6:80593051-80593052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs570513545	chr6:80593061-80593062	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs111403450	chr6:80593140-80593141	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs573594839	chr6:80593158-80593159	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs567485162	chr6:80593163-80593164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs163768	chr6:80593167-80593168	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs569313984	chr6:80593217-80593218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114196888	chr6:80593248-80593249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148013710	chr6:80593258-80593259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141927918	chr6:80593259-80593260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs58552724	chr6:80593267-80593268	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs150673981	chr6:80593269-80593270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs375053365	chr6:80593280-80593281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs558108067	chr6:80593284-80593285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs138942013	chr6:80593304-80593305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs191367679	chr6:80593334-80593335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536899227	chr6:80593342-80593343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113634822	chr6:80593373-80593374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372237234	chr6:80593413-80593414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74346656	chr6:80593443-80593444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556725407	chr6:80593479-80593480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569846335	chr6:80593480-80593481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547562516	chr6:80593552-80593553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs146396102	chr6:80593576-80593577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs75547443	chr6:80593580-80593581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs553057537	chr6:80593606-80593607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532818156	chr6:80593644-80593645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572531768	chr6:80593670-80593671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546458408	chr6:80593737-80593738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549475152	chr6:80593773-80593774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369074581	chr6:80593775-80593776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564766768	chr6:80593821-80593822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs180809210	chr6:80593825-80593826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576762242	chr6:80593870-80593871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544137513	chr6:80593881-80593882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548736989	chr6:80593958-80593959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs535532019	chr6:80593959-80593960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs62411152	chr6:80594033-80594034	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs535052811	chr6:80594093-80594094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558282180	chr6:80594143-80594144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77860169	chr6:80594171-80594172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs77885962	chr6:80594288-80594289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Cancer	20164919	CNVD

Chromatin state (count:908 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80589400-80600800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:80592000-80593200	Enhancers	Liver	Liver
3	chr6:80600800-80601200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:80601200-80604600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:80603600-80606600	Enhancers	HMEC	breast
6	chr6:80604200-80605600	Enhancers	NHEK	skin
7	chr6:80604400-80606400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:80604600-80605800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:80604600-80606400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:80604600-80606600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:80604800-80605800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:80604800-80606000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:80604800-80606200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:80605600-80606000	Enhancers	HSMM	muscle
15	chr6:80605600-80606000	Flanking Active TSS	NHEK	skin
16	chr6:80606000-80606400	Enhancers	NHEK	skin
17	chr6:80610400-80612600	Weak transcription	Esophagus	oesophagus
18	chr6:80612200-80612600	Enhancers	HSMM	muscle
19	chr6:80614800-80615600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:80617000-80617200	Enhancers	Psoas Muscle	Psoas
21	chr6:80617200-80617400	Enhancers	Fetal Thymus	thymus
22	chr6:80617200-80618000	Enhancers	Thymus	Thymus
23	chr6:80617200-80619200	Weak transcription	Psoas Muscle	Psoas
24	chr6:80617600-80625600	Weak transcription	Fetal Thymus	thymus
25	chr6:80618000-80618400	Weak transcription	Thymus	Thymus
26	chr6:80618400-80618600	Enhancers	Thymus	Thymus
27	chr6:80618400-80622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:80618400-80656000	Weak transcription	Aorta	Aorta
29	chr6:80618600-80626200	Weak transcription	Thymus	Thymus
30	chr6:80618800-80620400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:80619000-80619800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:80619200-80619600	Flanking Active TSS	Psoas Muscle	Psoas
33	chr6:80619200-80631800	Weak transcription	Esophagus	oesophagus
34	chr6:80619600-80620800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:80619600-80620800	Enhancers	Psoas Muscle	Psoas
36	chr6:80619800-80621000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr6:80620000-80620400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr6:80620000-80620600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:80620000-80620800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:80620200-80620400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:80620200-80622600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr6:80620400-80620600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:80620400-80620800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:80620400-80620800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:80620600-80620800	Enhancers	H9 Cell Line	embryonic stem cell
46	chr6:80620600-80620800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr6:80620600-80620800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:80620600-80621600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:80620600-80621800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:80620600-80628400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links