Variant report

Variant	esv3476738
Chromosome Location	chr7:126776101-126781487
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARF5-14	chr7:126777418-126777807	NONHSAT123129
2	lnc-ZNF800-5	chr7:126778502-126778855	expReg_chr7_8972_-
3	lnc-ZNF800-6	chr7:126777123-126777583	NONHSAT123128
4	lnc-ARF5-14	chr7:126778688-126778813	NONHSAT123129

Extended variants
information (count: 35 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575476371	chr7:126777147-126777148	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs545973180	chr7:126777178-126777179	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs17865863	chr7:126777213-126777214	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs567778704	chr7:126777237-126777238	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs145801143	chr7:126777238-126777239	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs192391123	chr7:126777257-126777258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs17863223	chr7:126777274-126777275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs533855454	chr7:126777275-126777276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs574291841	chr7:126777313-126777314	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs184601488	chr7:126777319-126777320	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs556869166	chr7:126777387-126777388	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs149304524	chr7:126777389-126777390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs189882199	chr7:126777469-126777470	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs564198543	chr7:126777526-126777527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs545963525	chr7:126777541-126777542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs144538668	chr7:126777543-126777544	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs561736399	chr7:126777545-126777546	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs528835181	chr7:126777601-126777602	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs550481365	chr7:126777606-126777607	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs562405162	chr7:126777611-126777612	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs181749844	chr7:126777648-126777649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs17867142	chr7:126777697-126777698	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs184913848	chr7:126777722-126777723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs148445973	chr7:126777733-126777734	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs189831617	chr7:126777763-126777764	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs73446210	chr7:126777768-126777769	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs553658645	chr7:126777771-126777772	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs576985152	chr7:126777798-126777799	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs538209651	chr7:126777799-126777800	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs567640235	chr7:126778528-126778529	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs531767913	chr7:126778635-126778636	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs184914498	chr7:126778655-126778656	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs572014289	chr7:126778656-126778657	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs575700005	chr7:126778747-126778748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs539350998	chr7:126778819-126778820	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Autism	20808228	CNVD
Prostate cancer	22341455	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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