Variant report

Variant	esv3478099
Chromosome Location	chr7:150301015-150306447
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr7:150302944-150303317	A549	lung:	n/a	n/a
2	POLR2A	chr7:150304969-150305006	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP6-1	chr7:150300649-150301732	NONHSAT124145

Variant related genes	Relation type
ENSG00000271568	TF binding region

Extended variants
information (count: 346 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:346 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201066342	chr7:150301030-150301031	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs202016966	chr7:150301031-150301032	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs371943706	chr7:150301069-150301070	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573641058	chr7:150301110-150301111	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs184237397	chr7:150301128-150301129	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs28651690	chr7:150301139-150301140	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs186734727	chr7:150301155-150301156	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs60335270	chr7:150301162-150301163	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs191540031	chr7:150301171-150301172	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs56211450	chr7:150301178-150301179	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs143525534	chr7:150301184-150301185	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs563656156	chr7:150301200-150301201	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs537674643	chr7:150301212-150301213	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs182376013	chr7:150301222-150301223	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs549625914	chr7:150301227-150301228	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs7784488	chr7:150301235-150301236	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs577732787	chr7:150301267-150301268	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs528645793	chr7:150301302-150301303	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs59074222	chr7:150301306-150301307	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs57791629	chr7:150301312-150301313	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs571058476	chr7:150301324-150301325	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs536742473	chr7:150301370-150301371	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs60035597	chr7:150301372-150301373	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs192935396	chr7:150301438-150301439	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs184993524	chr7:150301451-150301452	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs562436073	chr7:150301480-150301481	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs4109502	chr7:150301487-150301488	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs553189936	chr7:150301523-150301524	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs572952608	chr7:150301538-150301539	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs190433284	chr7:150301555-150301556	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs558775335	chr7:150301576-150301577	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs1916023	chr7:150301595-150301596	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs1916024	chr7:150301596-150301597	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs201726631	chr7:150301655-150301656	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs1916025	chr7:150301672-150301673	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs73727350	chr7:150301712-150301713	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs73727351	chr7:150301719-150301720	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs73464657	chr7:150301744-150301745	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs185813337	chr7:150301754-150301755	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs559949310	chr7:150301788-150301789	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576788073	chr7:150301841-150301842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs143177443	chr7:150301888-150301889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs144800530	chr7:150301898-150301899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs13307919	chr7:150301910-150301911	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs375739026	chr7:150301926-150301927	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs540380368	chr7:150301946-150301947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs530549707	chr7:150301957-150301958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs148581274	chr7:150301959-150301960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs13309077	chr7:150301986-150301987	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs62504166	chr7:150301988-150301989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Adrenocortical carcinoma	18281524	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150300200-150301200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr7:150300200-150301400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:150300200-150301600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:150300200-150301800	Enhancers	Primary T cells from cord blood	blood
5	chr7:150300200-150301800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:150300200-150303000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr7:150300400-150301400	Enhancers	Dnd41	blood
8	chr7:150300600-150301400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:150300600-150301800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr7:150300600-150302200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:150300600-150316800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:150300800-150301200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:150301000-150307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:150301200-150302600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr7:150301200-150307000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr7:150301400-150307000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:150301600-150303200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:150301800-150303000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:150301800-150303200	Weak transcription	Primary T cells from cord blood	blood
20	chr7:150302200-150307000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:150302600-150303800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr7:150302600-150309400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:150303000-150303600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:150303000-150306800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:150303200-150303600	Enhancers	Primary T cells from cord blood	blood
26	chr7:150303200-150303800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr7:150303600-150304800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:150303600-150307800	Weak transcription	Primary T cells from cord blood	blood
29	chr7:150303800-150307000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:150304800-150305200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:150305200-150306800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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