Variant report

Variant	esv3489405
Chromosome Location	chr19:53121944-53391394
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4183)
CpG islands
(count:4824)
Chromatin interactive
region (count:76)
LncRNA
region (count:53)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:4183 , 50 per page) page: 1 2 3 4 5 6 7 ... 84

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53228598-53228749	K562	blood:	n/a	n/a
2	ARID3A	chr19:53168737-53169156	K562	blood:	n/a	n/a
3	ARID3A	chr19:53191096-53191296	K562	blood:	n/a	n/a
4	ARID3A	chr19:53195806-53196040	K562	blood:	n/a	n/a
5	ARID3A	chr19:53141435-53141564	K562	blood:	n/a	n/a
6	ARID3A	chr19:53193641-53193781	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:53161930-53162203	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:53192180-53192511	HepG2	liver:	n/a	n/a
9	ARID3A	chr19:53227580-53227746	HepG2	liver:	n/a	n/a
10	ARID3A	chr19:53227189-53227366	K562	blood:	n/a	n/a
11	ARID3A	chr19:53199511-53199604	HepG2	liver:	n/a	n/a
12	ARID3A	chr19:53193667-53194024	K562	blood:	n/a	n/a
13	ARID3A	chr19:53192381-53192469	K562	blood:	n/a	n/a
14	ARID3A	chr19:53228340-53228382	K562	blood:	n/a	n/a
15	ARID3A	chr19:53238204-53238593	HepG2	liver:	n/a	n/a
16	ATF1	chr19:53227069-53227523	K562	blood:	n/a	n/a
17	ATF1	chr19:53168873-53169110	K562	blood:	n/a	n/a
18	ATF1	chr19:53238100-53238672	K562	blood:	n/a	n/a
19	ATF1	chr19:53219224-53219418	K562	blood:	n/a	n/a
20	ATF1	chr19:53150020-53150354	K562	blood:	n/a	n/a
21	ATF1	chr19:53289778-53290273	K562	blood:	n/a	n/a
22	ATF1	chr19:53193490-53194355	K562	blood:	n/a	n/a
23	ATF1	chr19:53233027-53233245	K562	blood:	n/a	n/a
24	ATF1	chr19:53260119-53260246	K562	blood:	n/a	n/a
25	ATF2	chr19:53141325-53141694	GM12878	blood:	n/a	n/a
26	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr19:53281984-53282357	GM12878	blood:	n/a	n/a
29	ATF3	chr19:53238046-53238465	K562	blood:	n/a	n/a
30	ATF3	chr19:53168777-53169106	K562	blood:	n/a	n/a
31	ATF3	chr19:53194034-53194304	K562	blood:	n/a	n/a
32	ATF3	chr19:53228814-53229132	K562	blood:	n/a	n/a
33	BACH1	chr19:53324738-53324945	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr19:53360719-53361014	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr19:53238107-53238408	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr19:53289805-53290074	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr19:53193336-53193863	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr19:53141538-53141574	K562	blood:	n/a	n/a
39	BATF	chr19:53281931-53282380	GM12878	blood:	n/a	chr19:53282197-53282207 chr19:53282192-53282203 chr19:53282193-53282203
40	BATF	chr19:53245884-53246161	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
41	BATF	chr19:53245915-53246089	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
42	BATF	chr19:53336721-53337013	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
43	BATF	chr19:53218901-53219396	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
44	BATF	chr19:53294543-53294932	GM12878	blood:	n/a	chr19:53294862-53294873 chr19:53294863-53294873 chr19:53294867-53294877
45	BATF	chr19:53218901-53219394	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
46	BATF	chr19:53243525-53243726	GM12878	blood:	n/a	n/a
47	BATF	chr19:53173308-53173530	GM12878	blood:	n/a	chr19:53173435-53173446 chr19:53173379-53173390
48	BATF	chr19:53336688-53337003	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
49	BATF	chr19:53294643-53295039	GM12878	blood:	n/a	chr19:53294862-53294873 chr19:53294863-53294873 chr19:53294867-53294877
50	BATF	chr19:53281917-53282463	GM12878	blood:	n/a	chr19:53282197-53282207 chr19:53282192-53282203 chr19:53282193-53282203

(count:4824 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53233245-53233295	AoSMC	blood vessel:	n/a
2	chr19:53238413-53238463	NB4	blood:	n/a
3	chr19:53194695-53194745	SK-N-MC	brain:	n/a
4	chr19:53141745-53141795	H1-hESC	embryonic stem cell:	embryo
5	chr19:53194695-53194745	HepG2	liver:	n/a
6	chr19:53233245-53233295	AoSMC	blood vessel:	n/a
7	chr19:53238413-53238463	NB4	blood:	n/a
8	chr19:53194695-53194745	SK-N-MC	brain:	n/a
9	chr19:53141745-53141795	H1-hESC	embryonic stem cell:	embryo
10	chr19:53194695-53194745	HepG2	liver:	n/a
11	chr19:53326219-53326269	T-47D	breast:	n/a
12	chr19:53233245-53233295	HepG2	liver:	n/a
13	chr19:53290445-53290495	AG04449	skin:	fetal
14	chr19:53290102-53290152	HCT-116	colon:	n/a
15	chr19:53238413-53238463	PFSK-1	brain:	n/a
16	chr19:53207899-53207949	T-47D	breast:	n/a
17	chr19:53233083-53233133	GM12891	blood:	n/a
18	chr19:53141372-53141422	RPTEC	kidney:	n/a
19	chr19:53362925-53362975	A549	lung:	n/a
20	chr19:53325913-53325963	Caco-2	colon:	n/a
21	chr19:53289933-53289983	AG09309	skin:	n/a
22	chr19:53361066-53361116	Hela-S3	cervix:	n/a
23	chr19:53197405-53197455	PANC-1	pancreas:	n/a
24	chr19:53194124-53194174	HCF	heart:	n/a
25	chr19:53383549-53383599	U87	brain:	n/a
26	chr19:53360728-53360778	HRE	kidney:	n/a
27	chr19:53293012-53293062	SK-N-MC	brain:	n/a
28	chr19:53239200-53239250	HEEpiC	esophagus:	n/a
29	chr19:53344366-53344416	HNPCEpiC	eye:	n/a
30	chr19:53192577-53192627	HRE	kidney:	n/a
31	chr19:53193302-53193352	NHDF-neo	bronchial:	n/a
32	chr19:53289524-53289574	T-47D	breast:	n/a
33	chr19:53324732-53324782	K562	blood:	n/a
34	chr19:53234126-53234176	SKMC	muscle:	n/a
35	chr19:53229766-53229816	SK-N-MC	brain:	n/a
36	chr19:53233245-53233295	HCM	heart:	n/a
37	chr19:53238413-53238463	AoSMC	blood vessel:	n/a
38	chr19:53290205-53290255	Caco-2	colon:	n/a
39	chr19:53142106-53142156	HL-60	blood:	n/a
40	chr19:53269486-53269536	SK-N-SH	brain:	n/a
41	chr19:53194699-53194749	PrEC	prostate:	n/a
42	chr19:53189507-53189557	GM06990	blood:	n/a
43	chr19:53362925-53362975	HCF	heart:	n/a
44	chr19:53303448-53303498	PrEC	prostate:	n/a
45	chr19:53324278-53324328	HEK293	kidney:	embryo
46	chr19:53361448-53361498	NHDF-neo	bronchial:	n/a
47	chr19:53193912-53193962	IMR90	lung:	fetal
48	chr19:53326219-53326269	Hela-S3	cervix:	n/a
49	chr19:53237871-53237921	BE2_C	brain:	n/a
50	chr19:53192577-53192627	LNCaP	prostate:	n/a

(count:76 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
2	chr19:53109653..53111853-chr19:53175457..53178162,2	K562	blood:
3	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
4	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
5	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
6	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
7	chr19:53188791..53192135-chr19:53192312..53195847,5	K562	blood:
8	chr19:53236450..53239197-chr19:53240698..53243642,2	K562	blood:
9	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
10	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
11	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
12	chr19:53178289..53180774-chr19:53181913..53184015,2	K562	blood:
13	chr19:53177587..53179889-chr19:53180855..53183073,2	K562	blood:
14	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
15	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
16	chr19:53324392..53324894-chr19:53934932..53935516,2	MCF-7	breast:
17	chr19:53167030..53169267-chr19:53236508..53239018,2	K562	blood:
18	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
19	chr19:53185339..53187127-chr19:53191376..53195013,3	K562	blood:
20	chr19:53139623..53144311-chr19:53192220..53194807,4	MCF-7	breast:
21	chr19:53141360..53143345-chr19:53143350..53145363,3	K562	blood:
22	chr19:53193667..53194241-chr2:61403847..61404574,2	NB4	blood:
23	chr19:53357060..53358583-chr19:53400479..53402706,2	MCF-7	breast:
24	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
25	chr19:53149533..53152778-chr19:53154420..53157722,3	K562	blood:
26	chr19:53139623..53144311-chr19:53192220..53194807,4	MCF-7	breast:
27	chr19:53140133..53142689-chr19:53604558..53606639,2	MCF-7	breast:
28	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
29	chr19:53284850..53287271-chr19:53288897..53290598,2	MCF-7	breast:
30	chr19:53170186..53171994-chr19:53174375..53177795,3	K562	blood:
31	chr19:53115087..53117490-chr19:53126115..53129040,2	K562	blood:
32	chr19:53280779..53283746-chr19:53287922..53290818,5	K562	blood:
33	chr19:53124557..53126496-chr19:53127801..53130626,2	K562	blood:
34	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
35	chr19:53181410..53183710-chr19:53186655..53189133,2	MCF-7	breast:
36	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
37	chr19:53178289..53180774-chr19:53181913..53184015,2	K562	blood:
38	chr19:53359564..53361265-chr19:53424872..53426783,2	MCF-7	breast:
39	chr19:53128911..53130963-chr19:53136725..53138232,2	K562	blood:
40	chr19:53199473..53201886-chr19:53208932..53211700,2	K562	blood:
41	chr19:53199473..53201886-chr19:53208932..53211700,2	K562	blood:
42	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
43	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
44	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
45	chr19:53124557..53126496-chr19:53127801..53130626,2	K562	blood:
46	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
47	chr19:53170186..53171994-chr19:53174375..53177795,3	K562	blood:
48	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
49	chr19:53377771..53379611-chr19:53399736..53401870,2	K562	blood:
50	chr19:53324563..53325122-chr19:53360322..53360852,2	NB4	blood:

(count:53 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF468-1	chr19:53357511-53357598	NR_102299
2	lnc-ZNF468-1	chr19:53360825-53360902	NR_102299
3	lnc-ZNF468-3	chr19:53324839-53324886	NONHSAT067588
4	lnc-ZNF600-1	chr19:53284245-53284717	NONHSAT067584
5	lnc-ZNF468-1	chr19:53357125-53357379	NR_102301
6	lnc-ZNF468-1	chr19:53341785-53345404	NR_102301
7	lnc-ZNF701-2	chr19:53301030-53301858	NONHSAT067586
8	lnc-ZNF468-1	chr19:53352340-53352466	NR_102300
9	lnc-ZNF600-1	chr19:53289848-53289977	NONHSAT067583
10	lnc-ZNF83-5	chr19:53224436-53224520	NONHSAT067580
11	lnc-ZNF600-1	chr19:53283906-53284308	NONHSAT067582
12	lnc-ZNF468-3	chr19:53317537-53317679	NONHSAT067589
13	lnc-ZNF468-1	chr19:53357511-53357598	NR_102300
14	lnc-ZNF468-1	chr19:53357511-53357598	NR_102301
15	lnc-ZNF468-1	chr19:53357125-53357379	NR_102299
16	lnc-ZNF701-2	chr19:53300917-53301869	NONHSAT067585
17	lnc-ZNF83-5	chr19:53227124-53227242	NONHSAT067579
18	lnc-ZNF83-5	chr19:53224406-53224520	NONHSAT067579
19	lnc-ZNF600-1	chr19:53284570-53284717	NONHSAT067583
20	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067579
21	lnc-ZNF701-2	chr19:53342913-53343520	NONHSAT067585
22	lnc-ZNF600-1	chr19:53284081-53284308	NONHSAT067583
23	lnc-ZNF468-3	chr19:53321197-53321284	NONHSAT067588
24	lnc-ZNF320-3	chr19:53367175-53367412	NONHSAT067592
25	lnc-ZNF468-1	chr19:53360825-53360902	NR_102301
26	lnc-ZNF320-1	chr19:53379431-53379838	NONHSAT067593
27	lnc-ZNF468-1	chr19:53357125-53357360	NR_102300
28	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067579
29	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067591
30	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067580
31	lnc-ZNF83-5	chr19:53238254-53238268	NONHSAT067580
32	lnc-ZNF468-3	chr19:53311129-53311386	NONHSAT067588
33	lnc-ZNF468-1	chr19:53352340-53352466	NR_102301
34	lnc-ZNF83-3	chr19:53211674-53212084	NONHSAT067577
35	lnc-ZNF468-1	chr19:53341785-53345404	NR_102299
36	lnc-ZNF468-1	chr19:53352340-53352466	NR_102299
37	lnc-ZNF468-1	chr19:53360825-53360902	NR_102300
38	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067592
39	lnc-ZNF83-3	chr19:53211457-53211582	NONHSAT067577
40	lnc-ZNF320-3	chr19:53367043-53367412	NONHSAT067591
41	lnc-ZNF468-1	chr19:53341785-53345404	NR_102300
42	lnc-ZNF468-1	chr19:53348432-53348549	NR_102300
43	lnc-ZNF468-2	chr19:53365060-53366119	NONHSAT067590
44	lnc-ZNF600-1	chr19:53289848-53290044	NONHSAT067582
45	lnc-ZNF320-3	chr19:53377411-53377490	NONHSAT067591
46	lnc-ZNF83-5	chr19:53238254-53238326	NONHSAT067579
47	lnc-ZNF468-3	chr19:53321197-53321281	NONHSAT067589
48	lnc-ZNF468-1	chr19:53348432-53348549	NR_102299
49	lnc-ZNF611-1	chr19:53153690-53156537	ENSG00000269825.1
50	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067580

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ZNF320	hsa-miR-192-5p	chr19:53381440-53381461
2	ZNF28	hsa-miR-155-5p	chr19:53301585-53301611
3	ZNF28	hsa-miR-155-5p	chr19:53301652-53301677
4	ZNF611	hsa-miR-155-5p	chr19:53207486-53207509

Variant related genes	Relation type
ZNF611	TF binding region
ENSG00000268225	TF binding region
ZNF320	TF binding region
ZNF28	TF binding region
ZNF468	TF binding region
ENSG00000269825	TF binding region
ENSG00000255875	TF binding region
ZNF600	TF binding region
ZNF83	TF binding region
ZNF611	CpG island
ENSG00000268225	CpG island
ZNF320	CpG island
ZNF28	CpG island
ZNF468	CpG island
ENSG00000269825	CpG island
ENSG00000255875	CpG island
ZNF600	CpG island
ZNF83	CpG island
ENSG00000269646	chromatin interactions
ENSG00000213793	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000173209	chromatin interactions
ENSG00000204604	chromatin interactions
ENSG00000189190	chromatin interactions
ENSG00000213020	chromatin interactions
ENSG00000160336	chromatin interactions
ENSG00000182986	chromatin interactions
ENSG00000255875	chromatin interactions
ENSG00000269825	chromatin interactions
ENSG00000241015	chromatin interactions
ENSG00000100600	chromatin interactions
ENSG00000170949	chromatin interactions
ENSG00000180257	chromatin interactions
ENSG00000213801	chromatin interactions
ENSG00000242779	chromatin interactions
ENSG00000198538	chromatin interactions
ENSG00000167766	chromatin interactions
HAUS6	miRNA target sites
PCBP2	miRNA target sites
LMNB1	miRNA target sites

Extended variants
information (count: 14190 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:14190 , 50 per page) page: 1 2 3 4 5 6 7 ... 284

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34309553	chr19:53121965-53121966	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs536600452	chr19:53121969-53121970	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs554983620	chr19:53121970-53121971	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs573446664	chr19:53121976-53121977	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs187659984	chr19:53121981-53121982	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs559222913	chr19:53121988-53121989	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs112244216	chr19:53121991-53121992	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs531843596	chr19:53121996-53121997	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs35068187	chr19:53122002-53122003	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs10402372	chr19:53122009-53122010	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs10402926	chr19:53122030-53122031	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs560202350	chr19:53122036-53122037	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs138582404	chr19:53122083-53122084	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs142837171	chr19:53122084-53122085	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs35821944	chr19:53122138-53122139	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs35489438	chr19:53122146-53122147	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs35672405	chr19:53122155-53122156	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs79168208	chr19:53122168-53122169	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	mRNA abundance
19	rs143384463	chr19:53122173-53122174	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs569264140	chr19:53122180-53122181	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs201971621	chr19:53122199-53122200	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs191940992	chr19:53122214-53122215	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs10402820	chr19:53122219-53122220	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs376863518	chr19:53122220-53122221	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs386810512	chr19:53122225-53122226	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs10402824	chr19:53122226-53122227	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs10404623	chr19:53122229-53122230	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs577522218	chr19:53122276-53122277	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs11669959	chr19:53122295-53122296	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs183809039	chr19:53122309-53122310	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs150757946	chr19:53122316-53122317	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs538054162	chr19:53122330-53122331	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs574440105	chr19:53122339-53122340	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs201062156	chr19:53122350-53122351	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs188299627	chr19:53122358-53122359	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs571706474	chr19:53122360-53122361	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs147451440	chr19:53122361-53122362	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs545733881	chr19:53122362-53122363	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs397944375	chr19:53122366-53122367	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs139347873	chr19:53122387-53122388	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs144438142	chr19:53122407-53122408	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs549528324	chr19:53122454-53122455	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs561713892	chr19:53122455-53122456	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs35706759	chr19:53122472-53122473	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs112342365	chr19:53122503-53122504	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs566898519	chr19:53122510-53122511	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs112964827	chr19:53122511-53122512	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs371633383	chr19:53122519-53122520	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs10403520	chr19:53122521-53122522	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs34447316	chr19:53122552-53122553	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:8560 , 50 per page) page: 1 2 3 4 5 6 7 ... 172

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53105800-53129000	Weak transcription	Hela-S3	cervix
2	chr19:53107000-53136600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:53112000-53131600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr19:53112400-53123400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:53112800-53123200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:53113400-53122000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr19:53113800-53123800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:53114200-53122200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:53115000-53122000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr19:53115200-53122000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr19:53115400-53122600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:53115400-53123800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:53115400-53123800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr19:53115400-53131800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr19:53115600-53122400	ZNF genes & repeats	Liver	Liver
16	chr19:53115600-53124600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:53115600-53130600	Strong transcription	Placenta	Placenta
18	chr19:53115600-53131200	Strong transcription	Dnd41	blood
19	chr19:53115600-53131400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr19:53116000-53122000	ZNF genes & repeats	Thymus	Thymus
21	chr19:53116200-53122200	Strong transcription	Brain Cingulate Gyrus	brain
22	chr19:53116200-53123200	Strong transcription	Brain Anterior Caudate	brain
23	chr19:53116200-53124000	ZNF genes & repeats	GM12878-XiMat	blood
24	chr19:53116200-53131000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:53116400-53123600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr19:53116400-53125000	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr19:53116400-53127000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr19:53116400-53127000	Strong transcription	Ovary	ovary
29	chr19:53116800-53125000	Strong transcription	Fetal Muscle Leg	muscle
30	chr19:53117000-53123200	Strong transcription	Left Ventricle	heart
31	chr19:53117200-53127400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr19:53117600-53122400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:53117800-53122000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr19:53117800-53126800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr19:53117800-53131200	Strong transcription	Adipose Nuclei	Adipose
36	chr19:53117800-53140400	Weak transcription	Brain Substantia Nigra	brain
37	chr19:53117800-53140400	Weak transcription	Fetal Heart	heart
38	chr19:53118000-53123200	Strong transcription	Osteobl	bone
39	chr19:53118000-53123600	Weak transcription	Small Intestine	intestine
40	chr19:53118000-53128600	Weak transcription	Psoas Muscle	Psoas
41	chr19:53118000-53140400	Weak transcription	Right Ventricle	heart
42	chr19:53118400-53123200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr19:53118600-53123200	ZNF genes & repeats	Spleen	Spleen
44	chr19:53118600-53124200	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr19:53118600-53132800	Strong transcription	Fetal Stomach	stomach
46	chr19:53118800-53124600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr19:53119000-53122400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:53119000-53124200	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr19:53119000-53125200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr19:53119400-53125400	Weak transcription	Colon Smooth Muscle	Colon

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