Variant report

Variant	esv3496164
Chromosome Location	chr8:20783591-20784745
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20781724..20783659-chr8:20784151..20785678,2	K562	blood:
2	chr8:20781724..20783659-chr8:20784151..20785678,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546307275	chr8:20783600-20783601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567524387	chr8:20783720-20783721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs571205440	chr8:20783815-20783816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs534533576	chr8:20783844-20783845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113999836	chr8:20783862-20783863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77226581	chr8:20783902-20783903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs972369	chr8:20783919-20783920	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs556831658	chr8:20783963-20783964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544134486	chr8:20783985-20783986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543013047	chr8:20783998-20783999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533342903	chr8:20784024-20784025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562240017	chr8:20784031-20784032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561437563	chr8:20784040-20784041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs375557226	chr8:20784058-20784059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs568712751	chr8:20784072-20784073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs79710301	chr8:20784074-20784075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540471653	chr8:20784081-20784082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565520376	chr8:20784152-20784153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184118739	chr8:20784172-20784173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555058472	chr8:20784186-20784187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs77698767	chr8:20784234-20784235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563023041	chr8:20784237-20784238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs573286469	chr8:20784246-20784247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs149244724	chr8:20784279-20784280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186685667	chr8:20784290-20784291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567458448	chr8:20784293-20784294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs79183766	chr8:20784305-20784306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534287307	chr8:20784338-20784339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs546577489	chr8:20784344-20784345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs146942222	chr8:20784349-20784350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs138516219	chr8:20784388-20784389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs367606792	chr8:20784390-20784391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs557510188	chr8:20784445-20784446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575772733	chr8:20784468-20784469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536653291	chr8:20784487-20784488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558723433	chr8:20784512-20784513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189949160	chr8:20784535-20784536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs545198465	chr8:20784545-20784546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs540961992	chr8:20784571-20784572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182609458	chr8:20784576-20784577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs144100577	chr8:20784595-20784596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs544372758	chr8:20784607-20784608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187313924	chr8:20784636-20784637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530482029	chr8:20784670-20784671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs542261785	chr8:20784680-20784681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs79240742	chr8:20784699-20784700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577308531	chr8:20784703-20784704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546909844	chr8:20784710-20784711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4961407	chr8:20784744-20784745	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Epilepsy	22083797	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	17603634	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21364760	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cancer	18840272	CNVD
Breast cancer	19602461	CNVD
Osteosarcoma	19286668	CNVD
Prostate cancer	19242612	CNVD
Prostate cancer	19258508	CNVD
small cell lung cancer	20016488	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Gastric adenocarcinoma	19115996	CNVD
Colorectal cancer	19455253	CNVD
Melanoma	20688739	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20782400-20785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:20782400-20785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links