Variant report
| Variant | esv3496811 |
|---|---|
| Chromosome Location | chr20:26029652-26039050 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr20:26036162-26036246 | LNCaP | prostate: | n/a | n/a |
| 2 | EP300 | chr20:26030237-26030532 | GM12878 | blood: | n/a | n/a |
| 3 | FOSL2 | chr20:26036292-26036671 | HepG2 | liver: | n/a | n/a |
| 4 | JUND | chr20:26030294-26030467 | HepG2 | liver: | n/a | n/a |
| 5 | MYC | chr20:26038228-26038316 | HUVEC | blood vessel: | n/a | n/a |
| 6 | MYC | chr20:26037840-26037971 | HUVEC | blood vessel: | n/a | n/a |
| 7 | POLR2A | chr20:26036718-26036879 | GM12878 | blood: | n/a | n/a |
| 8 | POU2F2 | chr20:26033462-26033770 | GM12878 | blood: | n/a | n/a |
| 9 | POU2F2 | chr20:26036323-26036629 | GM12878 | blood: | n/a | n/a |
| 10 | SPI1 | chr20:26037838-26037999 | K562 | blood: | n/a | n/a |
| 11 | ZBTB33 | chr20:26030302-26030447 | HepG2 | liver: | n/a | n/a |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FAM182A-4 | chr20:26038034-26038238 | ENSG00000125804.9 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FAM182A | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs77477557 | chr20:26030330-26030331 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 2 | rs199944201 | chr20:26030379-26030380 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 3 | rs201793237 | chr20:26036575-26036576 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 4 | rs6115497 | chr20:26037842-26037843 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 5 | rs111400661 | chr20:26038108-26038109 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:45)
| Disease | PMID | Source |
|---|---|---|
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 19627613 | CNVD |
| colon cancer | 17210682 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 16751803 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Central neurocytomas | 17123091 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Autism | 22495311 | CNVD |
| Anaplastic large cell lymphoma | 18179710 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Cancer | 21183584 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Chordoma | 18071362 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
| Breast cancer | 22522925 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
