Variant report

Variant	esv3515682
Chromosome Location	chr8:63215200-63225306
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559302252	chr8:63215225-63215226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs561707633	chr8:63215229-63215230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs538167342	chr8:63215311-63215312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs550024814	chr8:63215314-63215315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs182055079	chr8:63215319-63215320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113922714	chr8:63215332-63215333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs192342223	chr8:63215393-63215394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs73256771	chr8:63215406-63215407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs144282052	chr8:63215411-63215412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs148334318	chr8:63215428-63215429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs555026102	chr8:63215429-63215430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576471979	chr8:63215465-63215466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs12544342	chr8:63215615-63215616	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs183655264	chr8:63215716-63215717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577856107	chr8:63215722-63215723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs554014740	chr8:63215724-63215725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs375686566	chr8:63215818-63215819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs545228003	chr8:63215837-63215838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs34677168	chr8:63215874-63215875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs142473309	chr8:63215885-63215886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs78146466	chr8:63215896-63215897	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs76880132	chr8:63215926-63215927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs548638498	chr8:63215932-63215933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs139955260	chr8:63215940-63215941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs201075407	chr8:63215959-63215960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555850628	chr8:63216022-63216023	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374702252	chr8:63216024-63216025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs371694552	chr8:63216133-63216134	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs143498084	chr8:63216151-63216152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs11996393	chr8:63216178-63216179	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs538924629	chr8:63216188-63216189	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs139146636	chr8:63216220-63216221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575685444	chr8:63216250-63216251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566114291	chr8:63216310-63216311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201257571	chr8:63216337-63216338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200330813	chr8:63216342-63216343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536760879	chr8:63216372-63216373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs576632272	chr8:63216423-63216424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149939455	chr8:63216441-63216442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs367819247	chr8:63216448-63216449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544742116	chr8:63216472-63216473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs144935436	chr8:63216527-63216528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186281291	chr8:63216542-63216543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs577877507	chr8:63216562-63216563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs142086197	chr8:63216621-63216622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553953000	chr8:63216645-63216646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs371374697	chr8:63216665-63216666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544426302	chr8:63216778-63216779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572110573	chr8:63216803-63216804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs147773644	chr8:63216805-63216806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63212400-63216200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63214400-63216200	Enhancers	Fetal Brain Female	brain
3	chr8:63214600-63215800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:63215000-63216000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:63215200-63215800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:63215200-63216000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:63215200-63216000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:63215400-63215800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:63215400-63216000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:63215600-63216000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr8:63216000-63217200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:63217400-63217600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:63219200-63219600	Enhancers	HSMM	muscle
14	chr8:63225200-63225600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:63225200-63227000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links