Variant report

Variant	esv3693030
Chromosome Location	chr9:72035847-72048477
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:72037187-72037443	HepG2	liver:	n/a	n/a
2	BACH1	chr9:72044969-72045003	H1-hESC	embryonic stem cell:	n/a	n/a
3	CBX3	chr9:72046628-72046987	K562	blood:	n/a	n/a
4	CBX3	chr9:72046604-72047163	K562	blood:	n/a	n/a
5	CEBPB	chr9:72037167-72037438	Hela-S3	cervix:	n/a	n/a
6	CEBPD	chr9:72046517-72047194	K562	blood:	n/a	n/a
7	CEBPD	chr9:72046554-72047083	K562	blood:	n/a	n/a
8	CHD2	chr9:72036898-72036903	GM12878	blood:	n/a	n/a
9	CTCF	chr9:72043396-72043519	MCF-7	breast:	n/a	n/a
10	CTCF	chr9:72037042-72037487	HepG2	liver:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
11	CTCF	chr9:72037180-72037330	HEEpiC	esophagus:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
12	CTCF	chr9:72037220-72037370	K562	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
13	CTCF	chr9:72037220-72037370	HCFaa	heart:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
14	CTCF	chr9:72037260-72037410	HFF-Myc	foreskin:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
15	CTCF	chr9:72037200-72037350	GM12874	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
16	CTCF	chr9:72037158-72037434	MCF-7	breast:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
17	CTCF	chr9:72037200-72037350	HMEC	breast:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
18	CTCF	chr9:72040361-72040584	MCF-7	breast:	n/a	n/a
19	CTCF	chr9:72037200-72037350	HUVEC	blood vessel:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
20	CTCF	chr9:72037200-72037350	AG04450	lung:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
21	CTCF	chr9:72037057-72037453	K562	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
22	CTCF	chr9:72037122-72037454	Medullo	brain:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
23	CTCF	chr9:72037140-72037413	K562	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
24	CTCF	chr9:72037200-72037350	GM12872	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
25	CTCF	chr9:72036939-72037741	A549	lung:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
26	CTCF	chr9:72040456-72040537	LNCaP	prostate:	n/a	n/a
27	CTCF	chr9:72037140-72037290	A549	lung:	n/a	chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037277-72037286 chr9:72037277-72037290
28	CTCF	chr9:72037120-72037270	HA-sp	spinal cord:	n/a	n/a
29	CTCF	chr9:72043412-72043545	MCF-7	breast:	n/a	n/a
30	CTCF	chr9:72037200-72037350	Caco-2	colon:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
31	CTCF	chr9:72037200-72037350	HA-sp	spinal cord:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
32	CTCF	chr9:72043408-72043530	K562	blood:	n/a	n/a
33	CTCF	chr9:72037151-72037431	A549	lung:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
34	CTCF	chr9:72037180-72037330	AG09319	gingival:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
35	CTCF	chr9:72037140-72037290	GM12872	blood:	n/a	chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037277-72037286 chr9:72037277-72037290
36	CTCF	chr9:72043426-72043504	A549	lung:	n/a	n/a
37	CTCF	chr9:72037240-72037390	GM12870	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
38	CTCF	chr9:72037136-72037432	GM12892	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
39	CTCF	chr9:72037094-72037562	K562	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
40	CTCF	chr9:72037086-72037384	A549	lung:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
41	CTCF	chr9:72037080-72037469	T-47D	breast:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
42	CTCF	chr9:72037200-72037350	GM12864	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
43	CTCF	chr9:72037554-72037576	GM19238	blood:	n/a	n/a
44	CTCF	chr9:72037180-72037330	HCM	heart:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
45	CTCF	chr9:72037164-72037398	GM10248	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
46	CTCF	chr9:72037180-72037458	GM19239	blood:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
47	CTCF	chr9:72037156-72037426	Hela-S3	cervix:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
48	CTCF	chr9:72037200-72037350	NHLF	lung:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
49	CTCF	chr9:72037150-72037463	Kidney_OC	kidney:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291
50	CTCF	chr9:72037172-72037440	NHEK	skin:	n/a	chr9:72037274-72037292 chr9:72037279-72037289 chr9:72037277-72037290 chr9:72037276-72037297 chr9:72037277-72037286 chr9:72037277-72037290 chr9:72037275-72037291

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:72046240-72046290	CMK	blood:	n/a
2	chr9:72046240-72046290	GM06990	blood:	n/a
3	chr9:72046240-72046290	SAEC	small airway:	n/a
4	chr9:72046240-72046290	PFSK-1	brain:	n/a
5	chr9:72046240-72046290	BJ	skin:	n/a
6	chr9:72046240-72046290	HEEpiC	esophagus:	n/a
7	chr9:72046240-72046290	HMEC	breast:	n/a
8	chr9:72046240-72046290	HIPEpiC	eye:	n/a
9	chr9:72046240-72046290	HRCEpiC	kidney:	n/a
10	chr9:72046240-72046290	HRPEpiC	eye:	n/a
11	chr9:72046240-72046290	PANC-1	pancreas:	n/a
12	chr9:72046240-72046290	GM12878	blood:	n/a
13	chr9:72046240-72046290	T-47D	breast:	n/a
14	chr9:72046240-72046290	H1-hESC	embryonic stem cell:	embryo
15	chr9:72046240-72046290	NH-A	brain:	n/a
16	chr9:72046240-72046290	Caco-2	colon:	n/a
17	chr9:72046240-72046290	NB4	blood:	n/a
18	chr9:72046240-72046290	LNCaP	prostate:	n/a
19	chr9:72046240-72046290	AG04449	skin:	fetal
20	chr9:72046240-72046290	NHDF-neo	bronchial:	n/a
21	chr9:72046240-72046290	HCT-116	colon:	n/a
22	chr9:72046240-72046290	HL-60	blood:	n/a
23	chr9:72046240-72046290	IMR90	lung:	fetal
24	chr9:72046240-72046290	GM12892	blood:	n/a
25	chr9:72046240-72046290	ECC-1	luminal epithelium:	n/a
26	chr9:72046240-72046290	AG04450	lung:	fetal
27	chr9:72046240-72046290	Hepatocyte	liver:	n/a
28	chr9:72046240-72046290	U87	brain:	n/a
29	chr9:72046240-72046290	AoSMC	blood vessel:	n/a
30	chr9:72046240-72046290	MCF10A-Er-Src	breast:	n/a
31	chr9:72046240-72046290	SK-N-SH_RA	brain:	n/a
32	chr9:72046240-72046290	HNPCEpiC	eye:	n/a
33	chr9:72046240-72046290	BE2_C	brain:	n/a
34	chr9:72046240-72046290	AG10803	skin:	n/a
35	chr9:72046240-72046290	K562	blood:	n/a
36	chr9:72046240-72046290	AG09319	gingival:	n/a
37	chr9:72046240-72046290	HCF	heart:	n/a
38	chr9:72046240-72046290	HAEpiC	amniotic membrane:	n/a
39	chr9:72046240-72046290	HPAEpiC	pulmonary alveolar:	n/a
40	chr9:72046240-72046290	SKMC	muscle:	n/a
41	chr9:72046240-72046290	A549	lung:	n/a
42	chr9:72046240-72046290	NHBE	bronchial:	n/a
43	chr9:72046240-72046290	SK-N-SH	brain:	n/a
44	chr9:72046240-72046290	HepG2	liver:	n/a
45	chr9:72046240-72046290	ProgFib	skin:	n/a
46	chr9:72046240-72046290	HUVEC	blood vessel:	n/a
47	chr9:72046240-72046290	MCF-7	breast:	n/a
48	chr9:72046240-72046290	SK-N-MC	brain:	n/a
49	chr9:72046240-72046290	Jurkat	blood:	n/a
50	chr9:72046240-72046290	AG09309	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:72039845..72040903-chr9:72160889..72161458,4	MCF-7	breast:
2	chr9:72044312..72045985-chr9:72046714..72048470,2	MCF-7	breast:
3	chr9:72036812..72037787-chr9:72160880..72161856,6	MCF-7	breast:
4	chr9:72044312..72045985-chr9:72046714..72048470,2	MCF-7	breast:
5	chr9:72036664..72037777-chr9:72163377..72165001,9	K562	blood:
6	chr9:72036807..72037778-chr9:72056686..72057333,2	MCF-7	breast:
7	chr9:72036895..72038079-chr9:72163773..72164881,7	MCF-7	breast:
8	chr9:72038579..72040872-chr9:72161729..72164338,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APBA1-1	chr9:72042449-72044751	NONHSAT131778
2	lnc-APBA1-1	chr9:72043164-72043467	ENSG00000243888
3	lnc-APBA1-1	chr9:72043544-72043637	ENSG00000243888

Variant related genes	Relation type
ENSG00000243888	TF binding region
ENSG00000243888	CpG island

Extended variants
information (count: 540 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:540 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10120442	chr9:72035847-72035848	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs145057359	chr9:72035990-72035991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569093282	chr9:72035991-72035992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs10124296	chr9:72036002-72036003	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs551209473	chr9:72036016-72036017	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs566335811	chr9:72036055-72036056	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs2991690	chr9:72036073-72036074	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs10867481	chr9:72036099-72036100	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs147561626	chr9:72036102-72036103	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs535507849	chr9:72036107-72036108	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs114641552	chr9:72036116-72036117	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs575885749	chr9:72036126-72036127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs367694976	chr9:72036217-72036218	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546515644	chr9:72036219-72036220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs558446617	chr9:72036295-72036296	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs140169627	chr9:72036332-72036333	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs11138566	chr9:72036369-72036370	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs932967	chr9:72036380-72036381	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs577954247	chr9:72036401-72036402	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561660303	chr9:72036415-72036416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs190041496	chr9:72036457-72036458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs543911518	chr9:72036473-72036474	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs562501711	chr9:72036504-72036505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs149123463	chr9:72036525-72036526	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs551274907	chr9:72036563-72036564	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142199175	chr9:72036566-72036567	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs527506914	chr9:72036616-72036617	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs549137351	chr9:72036655-72036656	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs539940972	chr9:72036686-72036687	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs568493615	chr9:72036687-72036688	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs112999037	chr9:72036767-72036768	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs543838705	chr9:72036769-72036770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs180695913	chr9:72036775-72036776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs116474006	chr9:72036794-72036795	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs80099236	chr9:72036800-72036801	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
36	rs35885656	chr9:72036812-72036813	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
37	rs932966	chr9:72036814-72036815	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs200389338	chr9:72036816-72036817	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
39	rs375076977	chr9:72036817-72036818	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
40	rs140269780	chr9:72036819-72036820	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
41	rs371598257	chr9:72036832-72036833	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
42	rs534429458	chr9:72036865-72036866	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
43	rs555919590	chr9:72036880-72036881	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
44	rs573701657	chr9:72036881-72036882	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
45	rs544298399	chr9:72036883-72036884	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
46	rs562405984	chr9:72036890-72036891	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
47	rs577237683	chr9:72036916-72036917	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
48	rs368530287	chr9:72036996-72036997	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
49	rs564779813	chr9:72037022-72037023	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145433279	chr9:72037047-72037048	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	17899364	CNVD
Mantle cell lymphoma	19029149	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Epilepsy	22083797	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72027000-72040000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72036000-72036200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:72036000-72037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:72036200-72043000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72036400-72037200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:72036600-72082600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:72036800-72037000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr9:72036800-72037200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:72036800-72037200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr9:72036800-72037200	Enhancers	Stomach Mucosa	stomach
11	chr9:72036800-72037400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:72036800-72037600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:72036800-72045200	Weak transcription	Fetal Brain Female	brain
14	chr9:72037000-72037200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:72037000-72037200	Enhancers	Fetal Lung	lung
16	chr9:72037000-72037200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:72037000-72037600	Enhancers	Brain Angular Gyrus	brain
18	chr9:72037000-72037600	Enhancers	Brain Cingulate Gyrus	brain
19	chr9:72037000-72037600	Enhancers	Brain Hippocampus Middle	brain
20	chr9:72037000-72037600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr9:72037000-72037600	Enhancers	Brain Substantia Nigra	brain
22	chr9:72037000-72037600	Enhancers	Fetal Stomach	stomach
23	chr9:72037200-72037600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr9:72037200-72037800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:72037200-72039800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:72037200-72040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr9:72037200-72046600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:72037200-72048600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:72037200-72055600	Weak transcription	Fetal Lung	lung
30	chr9:72037200-72056200	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:72037400-72037600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr9:72037400-72037600	Enhancers	Fetal Kidney	kidney
33	chr9:72037400-72037600	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:72037400-72045200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:72037600-72039000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:72037600-72039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:72037600-72039600	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:72037600-72039600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:72037600-72039600	Weak transcription	Brain Substantia Nigra	brain
40	chr9:72037600-72039800	Weak transcription	Brain Angular Gyrus	brain
41	chr9:72037600-72039800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:72037600-72044800	Weak transcription	Fetal Stomach	stomach
43	chr9:72037600-72046600	Weak transcription	Fetal Kidney	kidney
44	chr9:72039000-72040000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:72039400-72040000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr9:72039600-72040200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr9:72039600-72040400	Enhancers	Brain Substantia Nigra	brain
48	chr9:72039600-72043200	Enhancers	Brain Hippocampus Middle	brain
49	chr9:72039800-72040200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr9:72039800-72040200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links