Variant report

Variant	esv3693207
Chromosome Location	chr15:87525156-87534930
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr15:87528430-87528718	HepG2	liver:	n/a	n/a
2	MAFK	chr15:87528299-87528788	HepG2	liver:	n/a	n/a
3	NANOG	chr15:87531407-87531652	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr15:87531160-87531285	K562	blood:	n/a	n/a
5	POLR2A	chr15:87530602-87530902	K562	blood:	n/a	n/a
6	POLR2A	chr15:87530318-87530378	K562	blood:	n/a	n/a
7	POLR2A	chr15:87528894-87528915	K562	blood:	n/a	n/a
8	POLR2A	chr15:87527739-87527748	MCF-7	breast:	n/a	n/a
9	POLR2A	chr15:87525786-87525788	K562	blood:	n/a	n/a
10	POLR2A	chr15:87528213-87528251	K562	blood:	n/a	n/a
11	POLR2A	chr15:87529194-87529522	K562	blood:	n/a	n/a
12	USF1	chr15:87531220-87531500	H1-hESC	embryonic stem cell:	n/a	n/a
13	USF1	chr15:87531188-87531496	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:87519920..87521707-chr15:87531872..87533377,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NTRK3-3	chr15:87531568-87531657	ENSG00000259620.1

No data

Variant related genes	Relation type
ENSG00000259620	TF binding region

Extended variants
information (count: 459 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:459 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs998859	chr15:87525156-87525157	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs552089846	chr15:87525265-87525266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192782780	chr15:87525299-87525300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs537651970	chr15:87525304-87525305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs998860	chr15:87525316-87525317	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs568233945	chr15:87525333-87525334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs998861	chr15:87525370-87525371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185459092	chr15:87525403-87525404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572382152	chr15:87525422-87525423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1465713	chr15:87525431-87525432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs8033867	chr15:87525436-87525437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs117611328	chr15:87525463-87525464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576764243	chr15:87525464-87525465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs569788987	chr15:87525473-87525474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558105331	chr15:87525500-87525501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555725126	chr15:87525523-87525524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192556354	chr15:87525534-87525535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs140744609	chr15:87525571-87525572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541589683	chr15:87525572-87525573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62034310	chr15:87525615-87525616	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs527308473	chr15:87525617-87525618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146427503	chr15:87525622-87525623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368591789	chr15:87525623-87525624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79720803	chr15:87525631-87525632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536904997	chr15:87525637-87525638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374094179	chr15:87525658-87525659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs62034339	chr15:87525699-87525700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs145878182	chr15:87525716-87525717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562594803	chr15:87525729-87525730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184192531	chr15:87525730-87525731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs78166468	chr15:87525755-87525756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371889071	chr15:87525756-87525757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs398070715	chr15:87525757-87525758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs549659238	chr15:87525886-87525887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542386077	chr15:87525920-87525921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs116461519	chr15:87525926-87525927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571546593	chr15:87525934-87525935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529067923	chr15:87525935-87525936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189129339	chr15:87525946-87525947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs566136007	chr15:87525976-87525977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78480627	chr15:87525980-87525981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs527951350	chr15:87526007-87526008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181250589	chr15:87526031-87526032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2701431	chr15:87526050-87526051	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs556005454	chr15:87526057-87526058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs574187782	chr15:87526059-87526060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs541582683	chr15:87526067-87526068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138252564	chr15:87526156-87526157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372510475	chr15:87526163-87526164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs142728703	chr15:87526174-87526175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87521800-87540600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:87526400-87526600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:87526600-87528400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:87528200-87528800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr15:87528400-87528800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:87528400-87529000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:87528400-87529200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:87528400-87530200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:87528800-87529800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:87528800-87529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:87529000-87529400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:87529200-87529600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:87529400-87531800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:87529600-87532000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr15:87529600-87532200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr15:87529800-87530000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:87529800-87532200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:87530000-87530200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:87530000-87530400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:87530200-87531200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:87530400-87531800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:87530400-87531800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr15:87531200-87531600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:87531200-87531600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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