Variant report

Variant	nsv1006002
Chromosome Location	chr3:164021906-164653572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1682)
CpG islands
(count:733)
Chromatin interactive
region (count:75)
LncRNA
region (count:45)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1682 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:164570594-164571040	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:164241910-164242382	HepG2	liver:	n/a	n/a
3	ATF1	chr3:164340965-164341135	K562	blood:	n/a	n/a
4	ATF2	chr3:164338649-164339096	GM12878	blood:	n/a	n/a
5	ATF2	chr3:164338735-164339077	GM12878	blood:	n/a	n/a
6	BACH1	chr3:164321025-164321070	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr3:164133548-164133563	K562	blood:	n/a	n/a
8	BATF	chr3:164178610-164178800	GM12878	blood:	n/a	n/a
9	BATF	chr3:164244057-164244370	GM12878	blood:	n/a	n/a
10	BATF	chr3:164368746-164368997	GM12878	blood:	n/a	n/a
11	BATF	chr3:164338748-164339044	GM12878	blood:	n/a	chr3:164338765-164338773
12	BCL11A	chr3:164244047-164244303	GM12878	blood:	n/a	n/a
13	BCL11A	chr3:164338776-164339114	GM12878	blood:	n/a	n/a
14	BCL3	chr3:164338778-164339097	GM12878	blood:	n/a	n/a
15	BCL3	chr3:164544607-164544813	GM12878	blood:	n/a	n/a
16	BHLHE40	chr3:164242057-164242298	HepG2	liver:	n/a	n/a
17	BHLHE40	chr3:164242007-164242375	HepG2	liver:	n/a	n/a
18	BHLHE40	chr3:164065590-164065659	K562	blood:	n/a	n/a
19	BRCA1	chr3:164169712-164169773	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr3:164315407-164315518	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr3:164401316-164401654	Hela-S3	cervix:	n/a	n/a
22	CCNT2	chr3:164487354-164487580	K562	blood:	n/a	n/a
23	CCNT2	chr3:164177641-164177933	K562	blood:	n/a	n/a
24	CCNT2	chr3:164352630-164352830	K562	blood:	n/a	n/a
25	CEBPB	chr3:164564924-164565245	MCF-7	breast:	n/a	chr3:164565003-164565014 chr3:164565187-164565200 chr3:164565052-164565061
26	CEBPB	chr3:164529852-164530197	A549	lung:	n/a	n/a
27	CEBPB	chr3:164212255-164212518	MCF-7	breast:	n/a	chr3:164212397-164212410
28	CEBPB	chr3:164107093-164107343	IMR90	lung:	n/a	chr3:164107227-164107236 chr3:164107225-164107238 chr3:164107227-164107236 chr3:164107227-164107236 chr3:164107226-164107237 chr3:164107225-164107238 chr3:164107225-164107236 chr3:164107227-164107236
29	CEBPB	chr3:164547744-164548019	A549	lung:	n/a	chr3:164547918-164547929 chr3:164547916-164547929 chr3:164547913-164547930 chr3:164547916-164547927 chr3:164547916-164547929
30	CEBPB	chr3:164338723-164339225	GM12878	blood:	n/a	n/a
31	CEBPB	chr3:164085608-164085831	IMR90	lung:	n/a	chr3:164085753-164085766
32	CEBPB	chr3:164270273-164270503	HepG2	liver:	n/a	n/a
33	CEBPB	chr3:164121359-164121699	IMR90	lung:	n/a	chr3:164121533-164121544 chr3:164121535-164121544
34	CEBPB	chr3:164241668-164242478	MCF-7	breast:	n/a	chr3:164241831-164241842
35	CEBPB	chr3:164412753-164413107	HepG2	liver:	n/a	chr3:164412919-164412930
36	CEBPB	chr3:164653344-164653663	HepG2	liver:	n/a	chr3:164653499-164653512 chr3:164653499-164653510
37	CEBPB	chr3:164580670-164581005	HepG2	liver:	n/a	chr3:164580840-164580851
38	CEBPB	chr3:164336820-164336981	A549	lung:	n/a	chr3:164336887-164336898
39	CEBPB	chr3:164097994-164098357	MCF-7	breast:	n/a	n/a
40	CEBPB	chr3:164529875-164530182	MCF-7	breast:	n/a	n/a
41	CEBPB	chr3:164121373-164121695	HepG2	liver:	n/a	chr3:164121533-164121544 chr3:164121535-164121544
42	CEBPB	chr3:164449989-164450201	A549	lung:	n/a	n/a
43	CEBPB	chr3:164566094-164566347	A549	lung:	n/a	chr3:164566220-164566231 chr3:164566217-164566234
44	CEBPB	chr3:164077961-164078328	HepG2	liver:	n/a	chr3:164078134-164078145
45	CEBPB	chr3:164132490-164132784	HepG2	liver:	n/a	chr3:164132597-164132608
46	CEBPB	chr3:164626785-164627096	IMR90	lung:	n/a	chr3:164626912-164626921 chr3:164626912-164626921 chr3:164626910-164626921 chr3:164626912-164626921 chr3:164626911-164626922 chr3:164626912-164626921 chr3:164626910-164626923 chr3:164626910-164626923
47	CEBPB	chr3:164121369-164121693	A549	lung:	n/a	chr3:164121533-164121544 chr3:164121535-164121544
48	CEBPB	chr3:164216794-164216934	HepG2	liver:	n/a	n/a
49	CEBPB	chr3:164399826-164399926	HepG2	liver:	n/a	chr3:164399882-164399893
50	CEBPB	chr3:164132486-164132757	A549	lung:	n/a	chr3:164132597-164132608

(count:733 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:164059011-164059061	BJ	skin:	n/a
2	chr3:164059011-164059061	BJ	skin:	n/a
3	chr3:164056463-164056513	PFSK-1	brain:	n/a
4	chr3:164056463-164056513	HRCEpiC	kidney:	n/a
5	chr3:164119737-164119787	NT2-D1	testis:	n/a
6	chr3:164059255-164059305	HRCEpiC	kidney:	n/a
7	chr3:164621774-164621824	T-47D	breast:	n/a
8	chr3:164621774-164621824	AG10803	skin:	n/a
9	chr3:164059124-164059174	AG09309	skin:	n/a
10	chr3:164569155-164569205	HEK293	kidney:	embryo
11	chr3:164056753-164056803	GM12891	blood:	n/a
12	chr3:164059255-164059305	HNPCEpiC	eye:	n/a
13	chr3:164059124-164059174	PFSK-1	brain:	n/a
14	chr3:164119737-164119787	U87	brain:	n/a
15	chr3:164050953-164051003	ovcar-3	ovarian:	n/a
16	chr3:164050953-164051003	HCT-116	colon:	n/a
17	chr3:164056463-164056513	AG09309	skin:	n/a
18	chr3:164621774-164621824	HCF	heart:	n/a
19	chr3:164119737-164119787	GM19239	blood:	n/a
20	chr3:164119959-164120009	NB4	blood:	n/a
21	chr3:164059124-164059174	BJ	skin:	n/a
22	chr3:164569155-164569205	AG04450	lung:	fetal
23	chr3:164059011-164059061	GM12891	blood:	n/a
24	chr3:164119020-164119070	HCF	heart:	n/a
25	chr3:164569155-164569205	GM12892	blood:	n/a
26	chr3:164056463-164056513	HCPEpiC	choroid plexus:	n/a
27	chr3:164059011-164059061	AG04449	skin:	fetal
28	chr3:164569155-164569205	NHDF-neo	bronchial:	n/a
29	chr3:164050953-164051003	ProgFib	skin:	n/a
30	chr3:164059124-164059174	HRE	kidney:	n/a
31	chr3:164502253-164502303	PANC-1	pancreas:	n/a
32	chr3:164569155-164569205	MCF-7	breast:	n/a
33	chr3:164059011-164059061	HepG2	liver:	n/a
34	chr3:164050953-164051003	HCM	heart:	n/a
35	chr3:164119020-164119070	AG09309	skin:	n/a
36	chr3:164056753-164056803	H1-hESC	embryonic stem cell:	embryo
37	chr3:164059255-164059305	HPAEpiC	pulmonary alveolar:	n/a
38	chr3:164059124-164059174	AoSMC	blood vessel:	n/a
39	chr3:164059124-164059174	HL-60	blood:	n/a
40	chr3:164050953-164051003	HEK293	kidney:	embryo
41	chr3:164056463-164056513	NB4	blood:	n/a
42	chr3:164056753-164056803	HCM	heart:	n/a
43	chr3:164059011-164059061	HAEpiC	amniotic membrane:	n/a
44	chr3:164502253-164502303	SK-N-SH_RA	brain:	n/a
45	chr3:164502253-164502303	SKMC	muscle:	n/a
46	chr3:164119020-164119070	K562	blood:	n/a
47	chr3:164050953-164051003	AG09309	skin:	n/a
48	chr3:164119020-164119070	AG04450	lung:	fetal
49	chr3:164119020-164119070	U87	brain:	n/a
50	chr3:164119737-164119787	GM12892	blood:	n/a

(count:75 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:164097647..164098678-chr3:164154502..164155534,10	MCF-7	breast:
2	chr3:164097647..164098715-chr3:164154502..164155534,19	MCF-7	breast:
3	chr1:23882760..23884909-chr3:164494123..164495643,3	K562	blood:
4	chr3:164145149..164147604-chr3:164148897..164151396,2	MCF-7	breast:
5	chr19:15442848..15443641-chr3:164192625..164193437,2	Hela-S3	cervix:
6	chr3:164559105..164562112-chr3:164562467..164564576,3	MCF-7	breast:
7	chr3:164616654..164619116-chr3:164619482..164621041,2	K562	blood:
8	chr3:164241669..164242499-chr3:164352238..164352926,2	MCF-7	breast:
9	chr3:164093244..164094225-chr3:164903325..164904113,2	MCF-7	breast:
10	chr3:164559105..164562112-chr3:164562467..164564576,3	MCF-7	breast:
11	chr3:164352695..164353520-chr3:164544596..164545181,2	MCF-7	breast:
12	chr3:164616654..164619116-chr3:164619482..164621041,2	K562	blood:
13	chr3:164097708..164098703-chr3:164352353..164353241,9	MCF-7	breast:
14	chr3:164241669..164242499-chr3:164352238..164352926,2	MCF-7	breast:
15	chr3:164459036..164461308-chr3:164464916..164467586,2	MCF-7	breast:
16	chr3:164154258..164155585-chr3:164352234..164353310,15	MCF-7	breast:
17	chr3:164321063..164322898-chr3:164324839..164326487,2	K562	blood:
18	chr3:163995585..163997750-chr3:164093655..164096327,2	K562	blood:
19	chr3:164190398..164192515-chr3:164196627..164199488,2	K562	blood:
20	chr3:164072695..164075481-chr3:164078791..164081086,2	MCF-7	breast:
21	chr3:164097647..164098715-chr3:164154502..164155534,19	MCF-7	breast:
22	chr3:164097711..164098324-chr3:164241488..164242482,3	MCF-7	breast:
23	chr3:164097709..164098424-chr3:164241494..164242452,3	MCF-7	breast:
24	chr3:164033562..164036466-chr3:164041623..164043945,2	MCF-7	breast:
25	chr3:164097711..164098324-chr3:164241488..164242187,2	MCF-7	breast:
26	chr3:163674674..163675466-chr3:164524045..164524647,3	MCF-7	breast:
27	chr3:164382723..164384365-chr3:164390839..164393550,2	MCF-7	breast:
28	chr3:164633247..164635532-chr3:164636615..164639484,2	MCF-7	breast:
29	chr3:164280228..164281066-chr3:164352373..164353274,2	MCF-7	breast:
30	chr3:164097709..164098424-chr3:164241494..164242452,3	MCF-7	breast:
31	chr3:164032173..164034796-chr3:164095339..164097722,2	K562	blood:
32	chr3:164172109..164174038-chr3:164174239..164176085,2	MCF-7	breast:
33	chr3:164212016..164212593-chr6:120624651..120625343,2	MCF-7	breast:
34	chr3:164097711..164099012-chr3:164352332..164353250,14	MCF-7	breast:
35	chr3:164569652..164570216-chr3:164903317..164903953,2	MCF-7	breast:
36	chr3:164355558..164357908-chr3:164371177..164373033,2	K562	blood:
37	chr3:164154966..164155479-chr3:164352397..164353197,2	MCF-7	breast:
38	chr3:164256176..164258649-chr3:164263680..164265313,2	MCF-7	breast:
39	chr3:164240704..164243300-chr3:164249655..164252008,2	MCF-7	breast:
40	chr3:164050649..164051226-chr3:164523700..164524566,2	MCF-7	breast:
41	chr3:164241773..164244042-chr3:164244735..164247521,2	MCF-7	breast:
42	chr3:164280228..164281066-chr3:164352373..164353274,2	MCF-7	breast:
43	chr3:164097731..164098551-chr3:164154660..164155422,4	MCF-7	breast:
44	chr3:164240704..164243300-chr3:164249655..164252008,2	MCF-7	breast:
45	chr3:164542869..164544652-chr3:164545206..164547480,2	K562	blood:
46	chr3:164097708..164098703-chr3:164352353..164353241,9	MCF-7	breast:
47	chr3:164172109..164174038-chr3:164174239..164176085,2	MCF-7	breast:
48	chr3:164155004..164155575-chr3:164352325..164352831,2	MCF-7	breast:
49	chr3:164241644..164242499-chr3:164352238..164353178,5	MCF-7	breast:
50	chr3:164032173..164034796-chr3:164095339..164097722,2	K562	blood:

(count:45 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERPINI1-9	chr3:164326780-164326856	XLOC_002900
2	lnc-SI-3	chr3:164326845-164326860	XLOC_003312
3	lnc-SI-2	chr3:164403812-164403864	XLOC_003313
4	lnc-SI-5	chr3:164420366-164420516	l_2521_chr3:164387549-164449856_testes
5	lnc-SI-2	chr3:164402987-164403070	XLOC_003313
6	lnc-SI-1	chr3:164431889-164432270	XLOC_003314
7	lnc-SERPINI1-9	chr3:164333587-164334281	XLOC_002900
8	lnc-SI-5	chr3:164475678-164475801	l_2521_chr3:164387549-164449856_testes
9	lnc-SERPINI1-9	chr3:164326780-164326856	XLOC_002900
10	lnc-SERPINI1-9	chr3:164337113-164337228	XLOC_002900
11	lnc-SI-1	chr3:164435360-164435579	XLOC_003314
12	lnc-SERPINI1-9	chr3:164337113-164338571	XLOC_002900
13	lnc-OTOL1-4	chr3:164136236-164136391	XLOC_002899
14	lnc-SI-2	chr3:164401605-164401689	XLOC_003313
15	lnc-SI-5	chr3:164503695-164503892	l_2521_chr3:164387549-164449856_testes
16	lnc-SERPINI1-9	chr3:164169033-164169323	XLOC_002900
17	lnc-SERPINI1-9	chr3:164326825-164326856	XLOC_002900
18	lnc-SI-1	chr3:164549202-164549268	XLOC_003314
19	lnc-OTOL1-4	chr3:164078868-164078917	XLOC_002899
20	lnc-SERPINI1-9	chr3:164405416-164405657	XLOC_002900
21	lnc-SI-5	chr3:164387550-164388087	l_2521_chr3:164387549-164449856_testes
22	lnc-SI-1	chr3:164448660-164448824	XLOC_003314
23	lnc-SERPINI1-9	chr3:164405416-164405657	XLOC_002900
24	lnc-OTOL1-4	chr3:164088402-164088464	XLOC_002899
25	lnc-SERPINI1-9	chr3:164337113-164337228	XLOC_002900
26	lnc-SI-5	chr3:164449747-164449856	l_2521_chr3:164387549-164449856_testes
27	lnc-OTOL1-4	chr3:164137191-164137295	XLOC_002899
28	lnc-SI-1	chr3:164431883-164432270	XLOC_003314
29	lnc-SI-3	chr3:164337117-164337782	XLOC_003312
30	lnc-SERPINI1-9	chr3:164333587-164334281	XLOC_002900
31	lnc-SI-5	chr3:164400353-164400433	l_2521_chr3:164387549-164449856_testes
32	lnc-SERPINI1-9	chr3:164326780-164326856	XLOC_002900
33	lnc-SERPINI1-9	chr3:164169033-164169323	XLOC_002900
34	lnc-SI-2	chr3:164388666-164389019	XLOC_003313
35	lnc-SERPINI1-9	chr3:164335647-164335826	XLOC_002900
36	lnc-SERPINI1-9	chr3:164326780-164326856	XLOC_002900
37	lnc-SERPINI1-9	chr3:164405416-164405798	XLOC_002900
38	lnc-SI-5	chr3:164420522-164420669	l_2521_chr3:164387549-164449856_testes
39	lnc-SERPINI1-9	chr3:164337113-164337228	XLOC_002900
40	lnc-SI-1	chr3:164448660-164448828	XLOC_003314
41	lnc-SERPINI1-9	chr3:164280960-164281013	XLOC_002900
42	lnc-SI-5	chr3:164402020-164402099	l_2521_chr3:164387549-164449856_testes
43	lnc-SI-5	chr3:164400110-164400236	l_2521_chr3:164387549-164449856_testes
44	lnc-SERPINI1-9	chr3:164280960-164281013	XLOC_002900
45	lnc-SI-5	chr3:164478992-164479090	l_2521_chr3:164387549-164449856_testes

No data

Variant related genes	Relation type
MIR720	TF binding region
ENSG00000241767	TF binding region
ENSG00000241636	TF binding region
MIR720	CpG island
ENSG00000241767	CpG island
ENSG00000241636	CpG island
ENSG00000141867	chromatin interactions
C1D	miRNA target sites
QKI	miRNA target sites
COL3A1	miRNA target sites
RORC	miRNA target sites
AKT1	miRNA target sites
AKAP12	miRNA target sites
AKAP13	miRNA target sites

Extended variants
information (count: 10029 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:10029 , 50 per page) page: 1 2 3 4 5 6 7 ... 201

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577835410	chr3:164021961-164021962	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs145145023	chr3:164021970-164021971	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560423458	chr3:164021973-164021974	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4855217	chr3:164021977-164021978	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs79852648	chr3:164022011-164022012	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115040240	chr3:164022055-164022056	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562646233	chr3:164022081-164022082	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs530895923	chr3:164022082-164022083	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556782603	chr3:164022118-164022119	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528736293	chr3:164022162-164022163	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548313388	chr3:164022163-164022164	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571834534	chr3:164022173-164022174	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs575335057	chr3:164022206-164022207	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542766580	chr3:164022222-164022223	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539577149	chr3:164022250-164022251	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546778284	chr3:164022266-164022267	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561027527	chr3:164022310-164022311	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs139162424	chr3:164022315-164022316	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs573064930	chr3:164022333-164022334	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs4855218	chr3:164022363-164022364	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs114642378	chr3:164022367-164022368	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564859001	chr3:164022402-164022403	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141730013	chr3:164022430-164022431	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374047612	chr3:164022454-164022455	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113225942	chr3:164022460-164022461	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs147097773	chr3:164022473-164022474	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs560386486	chr3:164022504-164022505	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7432660	chr3:164022524-164022525	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113629965	chr3:164022531-164022532	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111915536	chr3:164022564-164022565	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs367916291	chr3:164022565-164022566	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369832046	chr3:164022679-164022680	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34596815	chr3:164022692-164022693	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201918315	chr3:164022693-164022694	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs562768991	chr3:164022695-164022696	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531534469	chr3:164022706-164022707	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs550934295	chr3:164022731-164022732	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs564178098	chr3:164022744-164022745	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs533245031	chr3:164022745-164022746	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs546641874	chr3:164022750-164022751	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79303709	chr3:164022776-164022777	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566634364	chr3:164022777-164022778	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536012011	chr3:164022816-164022817	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549331295	chr3:164022821-164022822	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569513097	chr3:164022826-164022827	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs374143856	chr3:164022854-164022855	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557777567	chr3:164022861-164022862	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571311536	chr3:164022877-164022878	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191501705	chr3:164022884-164022885	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554996762	chr3:164022901-164022902	Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Bladder cancer	21909424	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Alcoholism	21790672	CNVD
Schizophrenia	20967226	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Acute myeloid leukemia	19651600	CNVD
Autism	19287141	CNVD
Incontinentia Pigmenti	22033527	CNVD
Rett syndrome	21593744	CNVD
Urothelial carcinoma	21177765	CNVD
Autism	20531469	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Glioma	20126413	CNVD
Recurrent pregnancy loss	19789632	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD
Chordoma	21215367	CNVD

Chromatin state (count:587 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:164020400-164023200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:164023200-164025000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:164025000-164026000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:164026000-164026600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:164026600-164031400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:164027000-164027200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr3:164027400-164028200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:164031400-164033800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:164033800-164034800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:164034800-164035400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:164035400-164035600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:164035600-164036200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:164036200-164038400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:164038400-164038600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:164038400-164039400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:164038400-164042400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:164038600-164038800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr3:164038600-164039200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:164038600-164039200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:164038600-164039200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:164038600-164039400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:164038600-164039400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:164038600-164039400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:164038600-164039600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr3:164038600-164039800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:164038800-164039000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:164038800-164039400	Enhancers	H1 Cell Line	embryonic stem cell
28	chr3:164038800-164039400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:164039000-164039200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr3:164039200-164039400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:164039200-164044000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:164039200-164050000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:164039400-164043000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:164039400-164043800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:164039400-164043800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:164039400-164043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:164039400-164048800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:164039600-164043800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:164039800-164044400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:164042400-164042800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:164042800-164043800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:164043000-164043200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr3:164043200-164043600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:164043600-164045200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr3:164043800-164044000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr3:164043800-164044200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:164043800-164044400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr3:164043800-164044800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr3:164043800-164045200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr3:164044000-164044200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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