Variant report

Variant	nsv1015572
Chromosome Location	chr7:39185895-39413053
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:39397463-39397590	K562	blood:	n/a	n/a
2	ATF1	chr7:39211870-39212050	K562	blood:	n/a	n/a
3	ATF1	chr7:39277790-39278075	K562	blood:	n/a	n/a
4	ATF1	chr7:39307974-39307980	K562	blood:	n/a	n/a
5	ATF3	chr7:39211655-39212190	HCT-116	colon:	n/a	n/a
6	ATF3	chr7:39363852-39364000	K562	blood:	n/a	n/a
7	ATF3	chr7:39211681-39212127	HCT-116	colon:	n/a	n/a
8	ATF3	chr7:39211837-39212012	K562	blood:	n/a	n/a
9	BACH1	chr7:39292565-39292761	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr7:39393147-39393709	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr7:39241689-39241693	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr7:39280589-39280764	H1-hESC	embryonic stem cell:	n/a	n/a
13	BATF	chr7:39378361-39378586	GM12878	blood:	n/a	n/a
14	BATF	chr7:39407571-39407911	GM12878	blood:	n/a	chr7:39407730-39407741
15	BATF	chr7:39407544-39407857	GM12878	blood:	n/a	chr7:39407730-39407741
16	BHLHE40	chr7:39224095-39224318	K562	blood:	n/a	n/a
17	BHLHE40	chr7:39351860-39352263	GM12878	blood:	n/a	n/a
18	BHLHE40	chr7:39277850-39278016	K562	blood:	n/a	n/a
19	BHLHE40	chr7:39308735-39308987	GM12878	blood:	n/a	n/a
20	BHLHE40	chr7:39307684-39307825	K562	blood:	n/a	chr7:39307774-39307783 chr7:39307774-39307783 chr7:39307768-39307789 chr7:39307775-39307784 chr7:39307773-39307782 chr7:39307772-39307785
21	BHLHE40	chr7:39374821-39374908	GM12878	blood:	n/a	n/a
22	BHLHE40	chr7:39309722-39309864	K562	blood:	n/a	n/a
23	CEBPB	chr7:39248329-39248569	HepG2	liver:	n/a	chr7:39248485-39248498 chr7:39248486-39248497
24	CEBPB	chr7:39211767-39212118	H1-hESC	embryonic stem cell:	n/a	chr7:39211935-39211946
25	CEBPB	chr7:39211626-39212180	HCT-116	colon:	n/a	chr7:39211935-39211946
26	CEBPB	chr7:39211800-39211990	K562	blood:	n/a	chr7:39211935-39211946
27	CEBPB	chr7:39371387-39371589	A549	lung:	n/a	chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371460-39371471 chr7:39371460-39371469 chr7:39371458-39371469 chr7:39371460-39371469
28	CEBPB	chr7:39346993-39347131	H1-hESC	embryonic stem cell:	n/a	chr7:39347089-39347100
29	CEBPB	chr7:39371404-39371620	IMR90	lung:	n/a	chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371460-39371471 chr7:39371460-39371469 chr7:39371458-39371469 chr7:39371460-39371469
30	CEBPB	chr7:39411444-39411693	K562	blood:	n/a	chr7:39411570-39411581
31	CEBPB	chr7:39221028-39221359	IMR90	lung:	n/a	chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221165-39221176 chr7:39221174-39221183
32	CEBPB	chr7:39347013-39347232	A549	lung:	n/a	chr7:39347089-39347100
33	CEBPB	chr7:39211780-39212078	IMR90	lung:	n/a	chr7:39211935-39211946
34	CEBPB	chr7:39371328-39371615	K562	blood:	n/a	chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371460-39371471 chr7:39371460-39371469 chr7:39371458-39371469 chr7:39371460-39371469
35	CEBPB	chr7:39393338-39393754	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr7:39211792-39212147	MCF-7	breast:	n/a	chr7:39211935-39211946
37	CEBPB	chr7:39346965-39347253	HepG2	liver:	n/a	chr7:39347089-39347100
38	CEBPB	chr7:39273402-39273602	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr7:39221021-39221347	A549	lung:	n/a	chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221165-39221176 chr7:39221174-39221183
40	CEBPB	chr7:39352297-39352441	H1-hESC	embryonic stem cell:	n/a	n/a
41	CEBPB	chr7:39393362-39393646	ECC-1	luminal epithelium:	n/a	n/a
42	CEBPB	chr7:39364223-39364472	IMR90	lung:	n/a	n/a
43	CEBPB	chr7:39280529-39280783	MCF-7	breast:	n/a	n/a
44	CEBPB	chr7:39346965-39347246	K562	blood:	n/a	chr7:39347089-39347100
45	CEBPB	chr7:39211764-39212068	Hela-S3	cervix:	n/a	chr7:39211935-39211946
46	CEBPB	chr7:39221015-39221258	H1-hESC	embryonic stem cell:	n/a	chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221174-39221183 chr7:39221165-39221176 chr7:39221174-39221183
47	CEBPB	chr7:39371311-39371537	HepG2	liver:	n/a	chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371458-39371471 chr7:39371460-39371469 chr7:39371460-39371471 chr7:39371460-39371469 chr7:39371458-39371469 chr7:39371460-39371469
48	CEBPB	chr7:39346954-39347228	IMR90	lung:	n/a	chr7:39347089-39347100
49	CEBPB	chr7:39211746-39212074	MCF-7	breast:	n/a	chr7:39211935-39211946
50	CEBPB	chr7:39411501-39411691	HepG2	liver:	n/a	chr7:39411570-39411581

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:39288391-39288441	HNPCEpiC	eye:	n/a
2	chr7:39305238-39305288	HEK293	kidney:	embryo
3	chr7:39269105-39269155	AoSMC	blood vessel:	n/a
4	chr7:39288391-39288441	HNPCEpiC	eye:	n/a
5	chr7:39305238-39305288	HEK293	kidney:	embryo
6	chr7:39269105-39269155	AoSMC	blood vessel:	n/a
7	chr7:39355842-39355892	GM12891	blood:	n/a
8	chr7:39373423-39373473	MCF10A-Er-Src	breast:	n/a
9	chr7:39269105-39269155	H1-hESC	embryonic stem cell:	embryo
10	chr7:39305238-39305288	HRCEpiC	kidney:	n/a
11	chr7:39373423-39373473	HCM	heart:	n/a
12	chr7:39383753-39383803	HIPEpiC	eye:	n/a
13	chr7:39298343-39298393	HRPEpiC	eye:	n/a
14	chr7:39311400-39311450	AG09309	skin:	n/a
15	chr7:39288391-39288441	HRE	kidney:	n/a
16	chr7:39225866-39225916	AoSMC	blood vessel:	n/a
17	chr7:39355842-39355892	GM12892	blood:	n/a
18	chr7:39234456-39234506	HCM	heart:	n/a
19	chr7:39311400-39311450	HEK293	kidney:	embryo
20	chr7:39332884-39332934	HL-60	blood:	n/a
21	chr7:39332884-39332934	NT2-D1	testis:	n/a
22	chr7:39350675-39350725	SK-N-SH_RA	brain:	n/a
23	chr7:39225866-39225916	NT2-D1	testis:	n/a
24	chr7:39234432-39234482	LNCaP	prostate:	n/a
25	chr7:39373423-39373473	HepG2	liver:	n/a
26	chr7:39332836-39332886	U87	brain:	n/a
27	chr7:39383753-39383803	RPTEC	kidney:	n/a
28	chr7:39234432-39234482	ProgFib	skin:	n/a
29	chr7:39234456-39234506	HCF	heart:	n/a
30	chr7:39373423-39373473	Caco-2	colon:	n/a
31	chr7:39311400-39311450	HCM	heart:	n/a
32	chr7:39332739-39332789	HEEpiC	esophagus:	n/a
33	chr7:39234432-39234482	HRPEpiC	eye:	n/a
34	chr7:39383753-39383803	NH-A	brain:	n/a
35	chr7:39234432-39234482	AG09309	skin:	n/a
36	chr7:39298343-39298393	BJ	skin:	n/a
37	chr7:39350675-39350725	PFSK-1	brain:	n/a
38	chr7:39326912-39326962	SK-N-MC	brain:	n/a
39	chr7:39234432-39234482	NB4	blood:	n/a
40	chr7:39393612-39393662	HEEpiC	esophagus:	n/a
41	chr7:39355842-39355892	T-47D	breast:	n/a
42	chr7:39332836-39332886	PrEC	prostate:	n/a
43	chr7:39311400-39311450	MCF10A-Er-Src	breast:	n/a
44	chr7:39305238-39305288	NH-A	brain:	n/a
45	chr7:39288391-39288441	SKMC	muscle:	n/a
46	chr7:39234456-39234506	SK-N-SH_RA	brain:	n/a
47	chr7:39225866-39225916	U87	brain:	n/a
48	chr7:39298343-39298393	MCF10A-Er-Src	breast:	n/a
49	chr7:39225866-39225916	Jurkat	blood:	n/a
50	chr7:39390659-39390709	HCF	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:39309116..39310743-chr7:39323473..39325470,2	K562	blood:
2	chr7:39229819..39231430-chr7:39234869..39237019,2	K562	blood:
3	chr7:39289451..39291797-chr7:39293526..39296522,2	MCF-7	breast:
4	chr7:39297978..39300684-chr7:39305823..39308386,2	K562	blood:
5	chr7:39229548..39232422-chr7:39234869..39240072,4	K562	blood:
6	chr14:74318927..74321495-chr7:39257326..39259640,2	MCF-7	breast:
7	chr7:39413024..39415362-chr7:39417404..39419498,2	K562	blood:
8	chr7:39289451..39291797-chr7:39293526..39296522,2	MCF-7	breast:
9	chr7:39261620..39263576-chr7:39264773..39267586,2	K562	blood:
10	chr7:39396368..39399059-chr7:39399429..39401562,2	K562	blood:
11	chr20:49416978..49419812-chr7:39387654..39389957,2	MCF-7	breast:
12	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:
13	chr7:39247260..39250280-chr7:39251957..39254313,3	K562	blood:
14	chr7:39273869..39276775-chr7:39278580..39280139,2	K562	blood:
15	chr7:39393361..39395593-chr7:39397266..39399914,2	K562	blood:
16	chr7:39309116..39310743-chr7:39323473..39325470,2	K562	blood:
17	chr7:39393361..39395593-chr7:39397266..39399914,2	K562	blood:
18	chr7:39181307..39183603-chr7:39185314..39187095,2	MCF-7	breast:
19	chr7:39247260..39250280-chr7:39251957..39254313,3	K562	blood:
20	chr7:39219732..39222456-chr7:39223590..39226155,2	K562	blood:
21	chr7:39384525..39386962-chr7:39393225..39395151,2	K562	blood:
22	chr7:39195274..39197700-chr7:39206282..39208251,3	K562	blood:
23	chr7:39297978..39300684-chr7:39305823..39308386,2	K562	blood:
24	chr7:39196101..39198199-chr7:39208525..39210124,2	K562	blood:
25	chr7:39238752..39240395-chr7:39241179..39245120,3	K562	blood:
26	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:
27	chr7:39385462..39387138-chr7:39393032..39395151,2	K562	blood:
28	chr7:39195274..39197700-chr7:39206282..39208251,3	K562	blood:
29	chr7:39229819..39231430-chr7:39234869..39237019,2	K562	blood:
30	chr7:39219732..39222456-chr7:39223590..39226155,2	K562	blood:
31	chr7:39385462..39387138-chr7:39393032..39395151,2	K562	blood:
32	chr7:39198600..39200599-chr7:39202951..39205373,2	K562	blood:
33	chr7:39238752..39240395-chr7:39241179..39245120,3	K562	blood:
34	chr7:39248504..39250280-chr7:39251957..39253769,2	K562	blood:
35	chr7:39191469..39193442-chr7:39196110..39198005,2	K562	blood:
36	chr7:39273869..39276775-chr7:39278580..39280139,2	K562	blood:
37	chr7:39261620..39263576-chr7:39264773..39267586,2	K562	blood:
38	chr7:39196101..39198199-chr7:39208525..39210124,2	K562	blood:
39	chr7:39396368..39399059-chr7:39399429..39401562,2	K562	blood:
40	chr7:39229548..39232422-chr7:39234869..39240072,4	K562	blood:
41	chr7:39356708..39357326-chr7:39504458..39505136,2	MCF-7	breast:
42	chr7:39248504..39250280-chr7:39251957..39253769,2	K562	blood:
43	chr7:39198600..39200599-chr7:39202951..39205373,2	K562	blood:
44	chr7:39384525..39386962-chr7:39393225..39395151,2	K562	blood:
45	chr6:99287363..99288262-chr7:39396990..39397837,2	MCF-7	breast:
46	chr7:39191469..39193442-chr7:39196110..39198005,2	K562	blood:

Variant related genes	Relation type
ENSG00000266481	TF binding region
ENSG00000206947	TF binding region
ENSG00000266481	CpG island
ENSG00000206947	CpG island
ENSG00000106536	chromatin interactions

Extended variants
information (count: 6698 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:6698 , 50 per page) page: 1 2 3 4 5 6 7 ... 134

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549474924	chr7:39185953-39185954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs150317652	chr7:39185978-39185979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs138000621	chr7:39185986-39185987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs562416557	chr7:39191803-39191804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs527664385	chr7:39191892-39191893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547847989	chr7:39191917-39191918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs374835138	chr7:39191922-39191923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs564522046	chr7:39191932-39191933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs111478194	chr7:39192000-39192001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs9639812	chr7:39192058-39192059	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs569711200	chr7:39192098-39192099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs535306556	chr7:39192114-39192115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs539884863	chr7:39192132-39192133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs181432770	chr7:39192262-39192263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs534301468	chr7:39192267-39192268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs140711203	chr7:39192277-39192278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs577571956	chr7:39192280-39192281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371310717	chr7:39192295-39192296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs557061959	chr7:39192323-39192324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576560262	chr7:39192335-39192336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542470873	chr7:39192390-39192391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs562353839	chr7:39192403-39192404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572744075	chr7:39192493-39192494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561333682	chr7:39192505-39192506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs528984162	chr7:39192533-39192534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564275780	chr7:39192547-39192548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550225278	chr7:39192559-39192560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77941234	chr7:39192583-39192584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75509716	chr7:39192608-39192609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs150828421	chr7:39192610-39192611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529030427	chr7:39192666-39192667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548798497	chr7:39192705-39192706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs565551829	chr7:39192754-39192755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs151065351	chr7:39192789-39192790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114880209	chr7:39192969-39192970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs139395704	chr7:39192970-39192971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574559012	chr7:39192972-39192973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571148957	chr7:39192977-39192978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs150062342	chr7:39192990-39192991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556759537	chr7:39193012-39193013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535186514	chr7:39193019-39193020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs145300643	chr7:39193023-39193024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs536370441	chr7:39193070-39193071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs34771836	chr7:39193083-39193084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs555969574	chr7:39193139-39193140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs543216944	chr7:39193171-39193172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs78459861	chr7:39193175-39193176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs567092066	chr7:39193802-39193803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs558911679	chr7:39193868-39193869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs534491019	chr7:39193885-39193886	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	18632612	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute myeloid leukemia	17237825	CNVD
Breast cancer	17899364	CNVD
Breast cancer	20409316	CNVD
Acute monocytic leukemia	16498392	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	19455253	CNVD
Glioblastoma multiforme	22286061	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Sezary syndrome	18413736	CNVD
Gastric cancer	24379144	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
abnormal development	18461090	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:734 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39185800-39186000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:39185800-39186000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39185800-39186000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:39185800-39186000	Enhancers	Lung	lung
5	chr7:39191800-39192400	Enhancers	Fetal Brain Male	brain
6	chr7:39192400-39193000	Weak transcription	Fetal Brain Male	brain
7	chr7:39193000-39193200	Enhancers	Fetal Brain Male	brain
8	chr7:39193800-39194600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr7:39194200-39194800	Enhancers	Small Intestine	intestine
10	chr7:39201200-39202400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:39201400-39201800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:39204200-39205000	Enhancers	Adipose Nuclei	Adipose
13	chr7:39204400-39205000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:39205000-39207800	Weak transcription	Adipose Nuclei	Adipose
15	chr7:39207800-39208400	Enhancers	Adipose Nuclei	Adipose
16	chr7:39207800-39208600	Enhancers	Colon Smooth Muscle	Colon
17	chr7:39208000-39208400	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:39211000-39211800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:39211000-39213000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:39211200-39212000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:39211200-39212000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:39211200-39212200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:39211200-39212200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:39211800-39213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:39213000-39213600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:39213600-39215400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:39215000-39247000	Weak transcription	Pancreas	Pancrea
28	chr7:39215400-39216200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr7:39218400-39219400	Enhancers	Fetal Stomach	stomach
30	chr7:39218800-39219200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:39219000-39219400	Enhancers	Fetal Brain Male	brain
32	chr7:39219200-39226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:39220600-39222600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:39222600-39222800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr7:39222800-39225800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:39222800-39225800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:39223200-39224400	Enhancers	Primary B cells from peripheral blood	blood
38	chr7:39223200-39224600	Enhancers	Fetal Intestine Small	intestine
39	chr7:39223800-39224000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr7:39223800-39226000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:39224200-39224400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr7:39224200-39224600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:39224400-39224600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr7:39224400-39226200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:39224600-39225800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:39225000-39225400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr7:39225400-39226000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr7:39225800-39226800	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr7:39225800-39227000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr7:39225800-39227000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links