Variant report

Variant	nsv1016461
Chromosome Location	chr6:55038131-55129663
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:468)
CpG islands
(count:673)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:468 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:55106148-55106428	HepG2	liver:	n/a	n/a
2	ATF1	chr6:55106125-55106315	K562	blood:	n/a	n/a
3	BACH1	chr6:55064188-55064368	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr6:55124928-55125306	HepG2	liver:	n/a	n/a
5	BRCA1	chr6:55073880-55074379	Hela-S3	cervix:	n/a	n/a
6	BRCA1	chr6:55063652-55063924	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr6:55128464-55128672	HepG2	liver:	n/a	n/a
8	CEBPB	chr6:55079078-55079286	MCF-7	breast:	n/a	chr6:55079185-55079196
9	CEBPB	chr6:55080665-55080951	H1-hESC	embryonic stem cell:	n/a	chr6:55080780-55080791
10	CEBPB	chr6:55079175-55079245	Hela-S3	cervix:	n/a	chr6:55079185-55079196
11	CEBPB	chr6:55043441-55043672	H1-hESC	embryonic stem cell:	n/a	n/a
12	CEBPB	chr6:55052528-55052762	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr6:55128428-55128729	Hela-S3	cervix:	n/a	n/a
14	CEBPB	chr6:55052538-55052674	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr6:55080629-55080970	HepG2	liver:	n/a	chr6:55080780-55080791
16	CEBPB	chr6:55080649-55080925	IMR90	lung:	n/a	chr6:55080780-55080791
17	CEBPB	chr6:55056228-55056422	Hela-S3	cervix:	n/a	chr6:55056340-55056351
18	CEBPB	chr6:55063547-55063970	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr6:55041792-55042109	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr6:55079093-55079332	IMR90	lung:	n/a	chr6:55079185-55079196
21	CEBPB	chr6:55056200-55056441	HepG2	liver:	n/a	chr6:55056340-55056351
22	CEBPB	chr6:55073268-55074454	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr6:55080602-55080961	A549	lung:	n/a	chr6:55080780-55080791
24	CEBPB	chr6:55079078-55079325	HepG2	liver:	n/a	chr6:55079185-55079196
25	CEBPB	chr6:55115805-55115843	H1-hESC	embryonic stem cell:	n/a	n/a
26	CEBPB	chr6:55039412-55039423	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD1	chr6:55105947-55106487	IMR90	lung:	n/a	n/a
28	CREB1	chr6:55105985-55106321	HepG2	liver:	n/a	n/a
29	CREB1	chr6:55106011-55106346	HepG2	liver:	n/a	n/a
30	CTBP2	chr6:55039013-55040594	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr6:55039306-55039370	MCF-7	breast:	n/a	n/a
32	CTCF	chr6:55106094-55106269	Lung_OC	lung:	n/a	n/a
33	CTCF	chr6:55106120-55106270	AoAF	blood vessel:	n/a	n/a
34	CTCF	chr6:55106160-55106310	HMEC	breast:	n/a	n/a
35	CTCF	chr6:55106160-55106310	HEEpiC	esophagus:	n/a	n/a
36	CTCF	chr6:55106080-55106230	SAEC	small airway:	n/a	n/a
37	CTCF	chr6:55106100-55106250	BJ	skin:	n/a	n/a
38	CTCF	chr6:55106120-55106270	AG04450	lung:	n/a	n/a
39	CTCF	chr6:55106200-55106350	HFF-Myc	foreskin:	n/a	n/a
40	CTCF	chr6:55106100-55106250	HCPEpiC	choroid plexus:	n/a	n/a
41	CTCF	chr6:55040540-55040690	HRE	kidney:	n/a	n/a
42	CTCF	chr6:55106100-55106250	AG04449	skin:	n/a	n/a
43	CTCF	chr6:55106100-55106250	HBMEC	blood vessel:	n/a	n/a
44	CTCF	chr6:55106080-55106230	SK-N-SH_RA	brain:	n/a	n/a
45	CTCF	chr6:55106113-55106290	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr6:55106105-55106318	Pancreas_OC	pancreas:	n/a	n/a
47	CTCF	chr6:55040100-55040250	HEK293	kidney:	n/a	n/a
48	CTCF	chr6:55106099-55106253	A549	lung:	n/a	n/a
49	CTCF	chr6:55106160-55106234	ProgFib	skin:	n/a	n/a
50	CTCF	chr6:55106120-55106270	AG09319	gingival:	n/a	n/a

(count:673 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:55038900-55038950	ProgFib	skin:	n/a
2	chr6:55038900-55038950	BE2_C	brain:	n/a
3	chr6:55038900-55038950	ProgFib	skin:	n/a
4	chr6:55038900-55038950	BE2_C	brain:	n/a
5	chr6:55038900-55038950	GM19239	blood:	n/a
6	chr6:55105271-55105321	HRPEpiC	eye:	n/a
7	chr6:55105265-55105315	HRPEpiC	eye:	n/a
8	chr6:55039259-55039309	ovcar-3	ovarian:	n/a
9	chr6:55104866-55104916	GM06990	blood:	n/a
10	chr6:55038641-55038691	HIPEpiC	eye:	n/a
11	chr6:55105265-55105315	AG10803	skin:	n/a
12	chr6:55038641-55038691	ProgFib	skin:	n/a
13	chr6:55039232-55039282	A549	lung:	n/a
14	chr6:55039232-55039282	Hepatocyte	liver:	n/a
15	chr6:55039295-55039345	AoSMC	blood vessel:	n/a
16	chr6:55103999-55104049	NH-A	brain:	n/a
17	chr6:55038641-55038691	HNPCEpiC	eye:	n/a
18	chr6:55039295-55039345	GM06990	blood:	n/a
19	chr6:55039295-55039345	ECC-1	luminal epithelium:	n/a
20	chr6:55039232-55039282	HNPCEpiC	eye:	n/a
21	chr6:55039622-55039672	SK-N-SH	brain:	n/a
22	chr6:55039382-55039432	NH-A	brain:	n/a
23	chr6:55103999-55104049	GM12878	blood:	n/a
24	chr6:55039259-55039309	ECC-1	luminal epithelium:	n/a
25	chr6:55105271-55105321	SKMC	muscle:	n/a
26	chr6:55039295-55039345	HRE	kidney:	n/a
27	chr6:55105271-55105321	SK-N-SH_RA	brain:	n/a
28	chr6:55039259-55039309	CMK	blood:	n/a
29	chr6:55104866-55104916	HUVEC	blood vessel:	n/a
30	chr6:55038641-55038691	HEEpiC	esophagus:	n/a
31	chr6:55104866-55104916	ProgFib	skin:	n/a
32	chr6:55104866-55104916	HCM	heart:	n/a
33	chr6:55105271-55105321	HNPCEpiC	eye:	n/a
34	chr6:55038900-55038950	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:55105271-55105321	AoSMC	blood vessel:	n/a
36	chr6:55039622-55039672	H1-hESC	embryonic stem cell:	embryo
37	chr6:55038900-55038950	GM12891	blood:	n/a
38	chr6:55038641-55038691	AG09319	gingival:	n/a
39	chr6:55105271-55105321	ovcar-3	ovarian:	n/a
40	chr6:55039295-55039345	LNCaP	prostate:	n/a
41	chr6:55105271-55105321	MCF-7	breast:	n/a
42	chr6:55038900-55038950	HMEC	breast:	n/a
43	chr6:55039295-55039345	GM19239	blood:	n/a
44	chr6:55039232-55039282	IMR90	lung:	fetal
45	chr6:55103999-55104049	HRPEpiC	eye:	n/a
46	chr6:55038900-55038950	SK-N-MC	brain:	n/a
47	chr6:55039382-55039432	IMR90	lung:	fetal
48	chr6:55103999-55104049	CMK	blood:	n/a
49	chr6:55038641-55038691	GM19239	blood:	n/a
50	chr6:55039295-55039345	HCPEpiC	choroid plexus:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:55092853..55094908-chr6:55096166..55098976,2	MCF-7	breast:
2	chr6:55032640..55035251-chr6:55040019..55043555,3	MCF-7	breast:
3	chr6:54740124..54741737-chr6:55103503..55105754,2	MCF-7	breast:
4	chr6:55036762..55038614-chr6:55041718..55044116,2	MCF-7	breast:
5	chr6:55074178..55076750-chr6:55098886..55101188,2	MCF-7	breast:
6	chr6:55128757..55130615-chr6:55130839..55132432,2	MCF-7	breast:
7	chr6:55103505..55105321-chr6:55107374..55109522,2	MCF-7	breast:
8	chr6:55036762..55038614-chr6:55041718..55044116,2	MCF-7	breast:
9	chr6:54711309..54713619-chr6:55073825..55075761,2	MCF-7	breast:
10	chr6:55103505..55105321-chr6:55107374..55109522,2	MCF-7	breast:
11	chr6:54582596..54584566-chr6:55092481..55094780,2	MCF-7	breast:
12	chr6:55092853..55094908-chr6:55096166..55098976,2	MCF-7	breast:
13	chr6:54710275..54712638-chr6:55059512..55062485,2	MCF-7	breast:
14	chr6:55067298..55069556-chr6:55069809..55072390,2	K562	blood:
15	chr6:55067298..55069556-chr6:55069809..55072390,2	K562	blood:
16	chr6:55074178..55076750-chr6:55098886..55101188,2	MCF-7	breast:

No data

Variant related genes	Relation type
HCRTR2	TF binding region
HCRTR2	CpG island
ENSG00000168143	chromatin interactions

Extended variants
information (count: 2203 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:2203 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75363952	chr6:55038167-55038168	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs140926542	chr6:55038218-55038219	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs192661818	chr6:55038227-55038228	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs537094004	chr6:55038229-55038230	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs568481213	chr6:55038671-55038672	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a
6	rs192524665	chr6:55038823-55038824	Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs553464120	chr6:55038856-55038857	Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs142553104	chr6:55038861-55038862	Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs199997961	chr6:55038947-55038948	Bivalent Enhancer Active TSS	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
10	rs557492006	chr6:55038948-55038949	Bivalent Enhancer Active TSS	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
11	rs9370397	chr6:55038955-55038956	Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs572398930	chr6:55038961-55038962	Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs546068247	chr6:55038971-55038972	Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs558789864	chr6:55038985-55038986	Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs373995163	chr6:55038989-55038990	Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs80000222	chr6:55039002-55039003	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs199944527	chr6:55039017-55039018	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs200543011	chr6:55039027-55039028	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs202048479	chr6:55039035-55039036	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs200024843	chr6:55039036-55039037	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs575571604	chr6:55039048-55039049	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs201145687	chr6:55039064-55039065	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs201943159	chr6:55039068-55039069	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs199932130	chr6:55039069-55039070	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs560693374	chr6:55039077-55039078	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs201021145	chr6:55039091-55039092	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs201824178	chr6:55039096-55039097	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs200274655	chr6:55039097-55039098	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs201035223	chr6:55039118-55039119	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs529721189	chr6:55039140-55039141	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs202235145	chr6:55039148-55039149	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs576279924	chr6:55039152-55039153	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs200428399	chr6:55039164-55039165	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs201504442	chr6:55039182-55039183	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs199634246	chr6:55039183-55039184	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs200530669	chr6:55039185-55039186	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs539937395	chr6:55039203-55039204	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs559857626	chr6:55039216-55039217	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs201539986	chr6:55039219-55039220	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs368148229	chr6:55039233-55039234	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs199702325	chr6:55039246-55039247	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs541721379	chr6:55039259-55039260	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs200608285	chr6:55039269-55039270	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs201629106	chr6:55039286-55039287	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs200162484	chr6:55039301-55039302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs200907489	chr6:55039303-55039304	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs202041383	chr6:55039306-55039307	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs571522264	chr6:55039307-55039308	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs199991760	chr6:55039324-55039325	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs200775372	chr6:55039336-55039337	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	20164919	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:278 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55038800-55039000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55038800-55039800	Active TSS	Fetal Brain Female	brain
3	chr6:55039000-55039200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:55039000-55039200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:55039000-55039200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:55039000-55039200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:55039000-55039200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:55039000-55039200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:55039000-55039200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:55039000-55039200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
11	chr6:55039000-55039200	Active TSS	Brain Hippocampus Middle	brain
12	chr6:55039000-55039200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:55039000-55039200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:55039000-55039200	Active TSS	Brain Substantia Nigra	brain
15	chr6:55039000-55039200	Enhancers	Right Ventricle	heart
16	chr6:55039000-55039400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:55039000-55039400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:55039000-55039400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:55039000-55039400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:55039000-55039600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr6:55039000-55039600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:55039000-55039600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
23	chr6:55039000-55039800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:55039000-55039800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:55039000-55039800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:55039000-55040000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:55039000-55040000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:55039000-55040200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr6:55039000-55040200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:55039000-55040200	Enhancers	Pancreas	Pancrea
31	chr6:55039000-55040200	Active TSS	Right Atrium	heart
32	chr6:55039000-55040200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr6:55039000-55040400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr6:55039000-55040400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:55039000-55040600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:55039000-55040600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr6:55039000-55040600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
38	chr6:55039000-55040600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:55039000-55040800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr6:55039000-55040800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
47	chr6:55039200-55039400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
48	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
49	chr6:55039200-55039400	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:55039200-55039400	Bivalent Enhancer	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links