Variant report

Variant	nsv1017548
Chromosome Location	chr5:118276479-118358394
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1486)
CpG islands
(count:1038)
Chromatin interactive
region (count:44)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1486 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:118357701-118357973	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:118344676-118345351	HepG2	liver:	n/a	n/a
3	ARID3A	chr5:118323657-118324653	HepG2	liver:	n/a	n/a
4	ARID3A	chr5:118325518-118325953	K562	blood:	n/a	n/a
5	ATF1	chr5:118281996-118282112	K562	blood:	n/a	n/a
6	ATF1	chr5:118324042-118324567	K562	blood:	n/a	n/a
7	ATF2	chr5:118324087-118324553	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr5:118288002-118288377	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr5:118323617-118324188	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr5:118323759-118324565	GM12878	blood:	n/a	n/a
11	ATF2	chr5:118323691-118324333	GM12878	blood:	n/a	n/a
12	ATF2	chr5:118288050-118288310	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF3	chr5:118323812-118324357	K562	blood:	n/a	chr5:118324280-118324289 chr5:118323965-118323974
14	ATF3	chr5:118323797-118324397	A549	lung:	n/a	chr5:118324280-118324289 chr5:118323965-118323974
15	BACH1	chr5:118323882-118324517	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr5:118309656-118309802	GM12878	blood:	n/a	n/a
17	BCL11A	chr5:118309390-118309588	GM12878	blood:	n/a	n/a
18	BCL11A	chr5:118309262-118309620	GM12878	blood:	n/a	n/a
19	BCL11A	chr5:118309651-118309813	GM12878	blood:	n/a	n/a
20	BCL3	chr5:118323611-118324764	A549	lung:	n/a	chr5:118324242-118324255 chr5:118324282-118324295 chr5:118323918-118323931 chr5:118324243-118324256
21	BCLAF1	chr5:118357554-118358293	GM12878	blood:	n/a	n/a
22	BCLAF1	chr5:118323630-118324497	GM12878	blood:	n/a	chr5:118324242-118324255 chr5:118324282-118324295 chr5:118323918-118323931 chr5:118324243-118324256
23	BCLAF1	chr5:118323654-118324453	GM12878	blood:	n/a	chr5:118324242-118324255 chr5:118324282-118324295 chr5:118323918-118323931 chr5:118324243-118324256
24	BHLHE40	chr5:118323615-118324738	K562	blood:	n/a	chr5:118323955-118323971 chr5:118324242-118324258 chr5:118323947-118323963
25	BHLHE40	chr5:118323823-118324181	A549	lung:	n/a	chr5:118323955-118323971 chr5:118323947-118323963
26	BHLHE40	chr5:118326263-118326578	K562	blood:	n/a	n/a
27	BHLHE40	chr5:118325428-118325663	K562	blood:	n/a	n/a
28	BHLHE40	chr5:118323583-118324622	GM12878	blood:	n/a	chr5:118323955-118323971 chr5:118324242-118324258 chr5:118323947-118323963
29	BHLHE40	chr5:118323733-118324476	HepG2	liver:	n/a	chr5:118323955-118323971 chr5:118324242-118324258 chr5:118323947-118323963
30	BRCA1	chr5:118323661-118324577	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr5:118323841-118324314	HepG2	liver:	n/a	n/a
32	BRCA1	chr5:118324075-118324330	GM12878	blood:	n/a	n/a
33	BRCA1	chr5:118323727-118324342	H1-hESC	embryonic stem cell:	n/a	n/a
34	CBX3	chr5:118331732-118332181	K562	blood:	n/a	n/a
35	CBX3	chr5:118335416-118335801	K562	blood:	n/a	n/a
36	CBX3	chr5:118323610-118324641	K562	blood:	n/a	n/a
37	CBX3	chr5:118335473-118335774	HCT-116	colon:	n/a	n/a
38	CBX3	chr5:118331802-118332093	K562	blood:	n/a	n/a
39	CBX3	chr5:118335427-118335730	K562	blood:	n/a	n/a
40	CCNT2	chr5:118323723-118324672	K562	blood:	n/a	chr5:118323971-118323980 chr5:118323965-118323974
41	CCNT2	chr5:118357586-118357786	K562	blood:	n/a	n/a
42	CEBPB	chr5:118357668-118358000	K562	blood:	n/a	chr5:118357936-118357949 chr5:118357938-118357949
43	CEBPB	chr5:118324136-118324422	K562	blood:	n/a	n/a
44	CEBPB	chr5:118344275-118344547	HepG2	liver:	n/a	chr5:118344412-118344423
45	CEBPB	chr5:118345256-118345304	H1-hESC	embryonic stem cell:	n/a	chr5:118345285-118345298 chr5:118345285-118345296 chr5:118345287-118345298 chr5:118345287-118345296
46	CEBPB	chr5:118323706-118324487	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr5:118323716-118324540	A549	lung:	n/a	n/a
48	CEBPB	chr5:118354385-118354462	A549	lung:	n/a	n/a
49	CEBPB	chr5:118281968-118282248	HCT-116	colon:	n/a	n/a
50	CEBPB	chr5:118323805-118324364	H1-hESC	embryonic stem cell:	n/a	n/a

(count:1038 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:118300663-118300713	CMK	blood:	n/a
2	chr5:118300663-118300713	CMK	blood:	n/a
3	chr5:118309333-118309383	PrEC	prostate:	n/a
4	chr5:118324324-118324374	Caco-2	colon:	n/a
5	chr5:118324619-118324669	GM12878	blood:	n/a
6	chr5:118324465-118324515	GM12891	blood:	n/a
7	chr5:118324324-118324374	GM12878	blood:	n/a
8	chr5:118308850-118308900	IMR90	lung:	fetal
9	chr5:118324324-118324374	AG04450	lung:	fetal
10	chr5:118324332-118324382	Jurkat	blood:	n/a
11	chr5:118324324-118324374	HCT-116	colon:	n/a
12	chr5:118323860-118323910	SAEC	small airway:	n/a
13	chr5:118309939-118309989	AG09309	skin:	n/a
14	chr5:118324104-118324154	HRPEpiC	eye:	n/a
15	chr5:118324104-118324154	HIPEpiC	eye:	n/a
16	chr5:118324332-118324382	HepG2	liver:	n/a
17	chr5:118306150-118306200	HCF	heart:	n/a
18	chr5:118309333-118309383	NHBE	bronchial:	n/a
19	chr5:118309333-118309383	HCF	heart:	n/a
20	chr5:118309460-118309510	HRCEpiC	kidney:	n/a
21	chr5:118309902-118309952	HIPEpiC	eye:	n/a
22	chr5:118300663-118300713	ovcar-3	ovarian:	n/a
23	chr5:118324465-118324515	HRE	kidney:	n/a
24	chr5:118288521-118288571	MCF10A-Er-Src	breast:	n/a
25	chr5:118309902-118309952	HCM	heart:	n/a
26	chr5:118306150-118306200	HMEC	breast:	n/a
27	chr5:118312966-118313016	PrEC	prostate:	n/a
28	chr5:118300663-118300713	HCF	heart:	n/a
29	chr5:118309333-118309383	ovcar-3	ovarian:	n/a
30	chr5:118324324-118324374	HRE	kidney:	n/a
31	chr5:118321556-118321606	HCM	heart:	n/a
32	chr5:118323860-118323910	LNCaP	prostate:	n/a
33	chr5:118324465-118324515	HepG2	liver:	n/a
34	chr5:118323860-118323910	HRE	kidney:	n/a
35	chr5:118321556-118321606	HMEC	breast:	n/a
36	chr5:118288521-118288571	HCM	heart:	n/a
37	chr5:118309939-118309989	HL-60	blood:	n/a
38	chr5:118308850-118308900	AG04449	skin:	fetal
39	chr5:118312966-118313016	HAEpiC	amniotic membrane:	n/a
40	chr5:118309460-118309510	ovcar-3	ovarian:	n/a
41	chr5:118309333-118309383	BJ	skin:	n/a
42	chr5:118309939-118309989	AG04450	lung:	fetal
43	chr5:118309460-118309510	HRE	kidney:	n/a
44	chr5:118324619-118324669	HL-60	blood:	n/a
45	chr5:118321556-118321606	AoSMC	blood vessel:	n/a
46	chr5:118324374-118324424	IMR90	lung:	fetal
47	chr5:118321556-118321606	AG09319	gingival:	n/a
48	chr5:118312966-118313016	MCF-7	breast:	n/a
49	chr5:118324332-118324382	BJ	skin:	n/a
50	chr5:118321556-118321606	H1-hESC	embryonic stem cell:	embryo

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:118323861..118326778-chr5:118787539..118789741,2	MCF-7	breast:
2	chr5:118159743..118162265-chr5:118287763..118289308,2	K562	blood:
3	chr5:118302817..118305365-chr5:118322521..118324091,2	MCF-7	breast:
4	chr5:118323366..118325416-chr5:118334115..118336361,2	K562	blood:
5	chr5:118352346..118354037-chr5:118405727..118408430,2	K562	blood:
6	chr5:118311467..118314093-chr5:118314485..118317147,2	K562	blood:
7	chr5:118315792..118320529-chr5:118321733..118325729,5	K562	blood:
8	chr5:118347998..118350163-chr5:118539971..118542368,2	MCF-7	breast:
9	chr5:118329827..118332166-chr5:118334300..118336774,2	K562	blood:
10	chr5:118323796..118326237-chr5:118405565..118407849,3	MCF-7	breast:
11	chr5:118357201..118359972-chr5:118405871..118408203,2	MCF-7	breast:
12	chr5:118357331..118357914-chr5:118771263..118771765,2	K562	blood:
13	chr1:6484602..6485206-chr5:118323676..118324379,2	HCT-116	colon:
14	chr5:118302138..118305564-chr5:118322264..118325147,4	K562	blood:
15	chr5:118279929..118282608-chr5:118283438..118285433,2	K562	blood:
16	chr5:118322938..118326606-chr5:118602920..118605792,4	MCF-7	breast:
17	chr5:118357160..118359907-chr5:118603560..118606226,2	MCF-7	breast:
18	chr5:118347860..118350403-chr5:118604128..118605808,2	MCF-7	breast:
19	chr5:118322873..118325384-chr5:118350210..118351979,2	MCF-7	breast:
20	chr5:118315876..118318901-chr5:118321943..118324259,3	MCF-7	breast:
21	chr14:39581660..39583614-chr5:118323067..118325473,2	MCF-7	breast:
22	chr5:118279929..118282608-chr5:118283438..118285433,2	K562	blood:
23	chr5:118315933..118319835-chr5:118323303..118326680,3	MCF-7	breast:
24	chr5:118346442..118349626-chr5:118352626..118357171,4	K562	blood:
25	chr5:118356332..118359280-chr5:118404469..118406379,2	K562	blood:
26	chr5:118323401..118324963-chr5:118329000..118330937,2	MCF-7	breast:
27	chr5:118324139..118325700-chr5:118329954..118332656,2	K562	blood:
28	chr5:118332899..118334561-chr5:118335730..118338055,2	K562	blood:
29	chr20:62205096..62205736-chr5:118323546..118324400,2	HCT-116	colon:
30	chr5:118348689..118350989-chr5:118368039..118370331,2	MCF-7	breast:
31	chr5:118034213..118035082-chr5:118292213..118292973,2	MCF-7	breast:
32	chr5:118357310..118358382-chr5:118747153..118748053,5	MCF-7	breast:
33	chr5:118323277..118326022-chr5:118603985..118605806,3	MCF-7	breast:
34	chr5:118357582..118358760-chr5:118747481..118748200,3	MCF-7	breast:
35	chr5:118332899..118334561-chr5:118335730..118338055,2	K562	blood:
36	chr5:118126334..118128715-chr5:118291929..118293772,2	MCF-7	breast:
37	chr5:118311467..118314093-chr5:118314485..118317147,2	K562	blood:
38	chr5:118322493..118325395-chr5:118402550..118406560,4	K562	blood:
39	chr5:118329827..118332166-chr5:118334300..118336774,2	K562	blood:
40	chr5:118357259..118357861-chr5:118747519..118748249,2	K562	blood:
41	chr5:118323806..118324367-chr5:118405985..118406648,2	Hela-S3	cervix:
42	chr5:118320682..118322479-chr5:118322824..118324515,2	MCF-7	breast:
43	chr5:118322908..118325429-chr5:118357118..118359882,3	MCF-7	breast:
44	chr5:118273316..118275131-chr5:118276806..118278842,2	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD2-1	chr5:118342769-118342900	NONHSAT103410
2	lnc-DTWD2-1	chr5:118342042-118342325	ENSG00000249494.1
3	lnc-DTWD2-1	chr5:118342769-118342900	ENSG00000249494.1
4	lnc-DTWD2-1	chr5:118340986-118342325	NONHSAT103410
5	lnc-DTWD2-1	chr5:118342453-118342556	ENSG00000249494.1
6	lnc-DTWD2-1	chr5:118340335-118340543	NONHSAT103410
7	lnc-DTWD2-1	chr5:118355772-118355935	NONHSAT103410
8	lnc-DTWD2-1	chr5:118355610-118355935	ENSG00000249494.1
9	lnc-DTWD2-1	chr5:118332007-118332068	NONHSAT103410
10	lnc-DTWD2-1	chr5:118355772-118355935	ENSG00000249494.1
11	lnc-DTWD2-1	chr5:118337158-118337293	NONHSAT103410
12	lnc-DTWD2-1	chr5:118347498-118347773	ENSG00000249494.1
13	lnc-DMXL1-6	chr5:118347166-118347751	NONHSAT103412
14	lnc-DTWD2-1	chr5:118342453-118342556	NONHSAT103410
15	lnc-DTWD2-1	chr5:118355772-118355935	ENSG00000249494.1

No data

Variant related genes	Relation type
DTWD2	TF binding region
ENSG00000250928	TF binding region
RNU6-373P	TF binding region
PTMAP2	TF binding region
ENSG00000250678	TF binding region
DTWD2	CpG island
ENSG00000250928	CpG island
RNU6-373P	CpG island
PTMAP2	CpG island
ENSG00000250678	CpG island
ENSG00000130589	chromatin interactions
ENSG00000169570	chromatin interactions
ENSG00000172869	chromatin interactions
ENSG00000145779	chromatin interactions
ENSG00000069812	chromatin interactions
ENSG00000092208	chromatin interactions
ENSG00000133835	chromatin interactions
ENSG00000187017	chromatin interactions
ENSG00000239011	chromatin interactions
ENSG00000249494	chromatin interactions
ENSG00000250928	chromatin interactions

Extended variants
information (count: 3339 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:3339 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544702732	chr5:118276484-118276485	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567955128	chr5:118276515-118276516	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534612570	chr5:118276531-118276532	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141537262	chr5:118276550-118276551	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538108928	chr5:118276552-118276553	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527264237	chr5:118276565-118276566	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146837877	chr5:118276593-118276594	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140676257	chr5:118276677-118276678	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs369285987	chr5:118276715-118276716	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs17381247	chr5:118276728-118276729	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs114502722	chr5:118276793-118276794	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184772932	chr5:118276818-118276819	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145852620	chr5:118276822-118276823	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs17144840	chr5:118276839-118276840	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs571640441	chr5:118276841-118276842	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188752947	chr5:118276885-118276886	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553828863	chr5:118276978-118276979	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181575098	chr5:118277017-118277018	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571945372	chr5:118277046-118277047	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs536452608	chr5:118277076-118277077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs58886471	chr5:118277085-118277086	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs576075619	chr5:118277089-118277090	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545125582	chr5:118277090-118277091	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558349070	chr5:118277099-118277100	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572118535	chr5:118277142-118277143	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199878231	chr5:118277145-118277146	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111368833	chr5:118277146-118277147	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561177145	chr5:118277172-118277173	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529988081	chr5:118277182-118277183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184841321	chr5:118277189-118277190	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563532823	chr5:118277194-118277195	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111329609	chr5:118277229-118277230	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575937381	chr5:118277257-118277258	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186342871	chr5:118277263-118277264	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149651459	chr5:118277285-118277286	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527687083	chr5:118277342-118277343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10079150	chr5:118277370-118277371	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs200957646	chr5:118277401-118277402	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs186081863	chr5:118277408-118277409	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536514917	chr5:118277420-118277421	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550194306	chr5:118277434-118277435	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs189918820	chr5:118277443-118277444	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs538855137	chr5:118277450-118277451	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs558659915	chr5:118277451-118277452	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs181837591	chr5:118277454-118277455	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs534606476	chr5:118277559-118277560	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs299211	chr5:118277582-118277583	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs574468590	chr5:118277649-118277650	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543727620	chr5:118277652-118277653	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs563431681	chr5:118277695-118277696	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Prostate cancer	22341455	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:816 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
3	chr5:118244000-118279600	Weak transcription	Liver	Liver
4	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:118252000-118279000	Weak transcription	Left Ventricle	heart
7	chr5:118253200-118280200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:118253400-118279200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:118254000-118279800	Weak transcription	Pancreas	Pancrea
10	chr5:118256000-118277800	Weak transcription	Fetal Intestine Small	intestine
11	chr5:118257400-118285600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:118257600-118279800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:118258000-118280400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:118259600-118286800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:118259600-118305000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:118260600-118289400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:118262600-118282800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:118263000-118306000	Weak transcription	Primary T cells from cord blood	blood
19	chr5:118263400-118304000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr5:118268400-118286800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:118268600-118277400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:118269400-118276800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:118269400-118277800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:118269600-118286800	Weak transcription	Adipose Nuclei	Adipose
25	chr5:118270400-118291800	Weak transcription	Fetal Intestine Large	intestine
26	chr5:118271200-118277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:118271600-118277800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:118271600-118288400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:118271800-118278400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:118271800-118286600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:118272200-118286000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:118273600-118295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:118274000-118280200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:118274000-118288000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:118274400-118281800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:118276000-118278200	Weak transcription	Fetal Muscle Leg	muscle
37	chr5:118276200-118281200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr5:118276800-118277800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:118277400-118279600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:118277400-118279800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:118277600-118278600	Weak transcription	HSMMtube	muscle
42	chr5:118277800-118278000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:118277800-118278600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr5:118277800-118278600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:118277800-118278600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr5:118277800-118278600	Strong transcription	Fetal Intestine Small	intestine
47	chr5:118278000-118278400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:118278200-118278400	Strong transcription	Fetal Muscle Leg	muscle
49	chr5:118278200-118280000	Weak transcription	Dnd41	blood
50	chr5:118278400-118278800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links