Variant report

Variant	nsv1023834
Chromosome Location	chr8:9798072-9904788
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:9898818..9899707-chr8:10131509..10132062,2	MCF-7	breast:
2	chr8:9815144..9815911-chr8:10131182..10132031,2	MCF-7	breast:
3	chr8:9898731..9899394-chr8:10399301..10400191,2	MCF-7	breast:
4	chr8:9803039..9805546-chr8:9809803..9812661,2	K562	blood:
5	chr8:9815524..9816032-chr8:10190161..10190769,2	MCF-7	breast:
6	chr8:9902844..9907723-chr8:9908592..9913674,8	MCF-7	breast:
7	chr8:9891135..9893844-chr8:9895731..9897309,2	K562	blood:
8	chr8:9839190..9841149-chr8:9843519..9845588,2	K562	blood:
9	chr8:9804046..9805620-chr8:9811161..9814003,2	K562	blood:
10	chr8:9891135..9893844-chr8:9895731..9897309,2	K562	blood:
11	chr8:9803809..9806790-chr8:9814739..9816727,2	K562	blood:
12	chr8:9804046..9805620-chr8:9811161..9814003,2	K562	blood:
13	chr8:9815054..9815608-chr8:10190020..10190697,2	MCF-7	breast:
14	chr8:9876744..9878781-chr8:9911120..9914039,2	K562	blood:
15	chr8:9898822..9899498-chr8:10190113..10190904,3	K562	blood:
16	chr8:9898874..9899812-chr8:10282419..10282930,2	K562	blood:
17	chr8:9859284..9862073-chr8:9868514..9870369,2	K562	blood:
18	chr8:9823483..9825109-chr8:9827263..9829750,2	K562	blood:
19	chr8:9859284..9862073-chr8:9868514..9870369,2	K562	blood:
20	chr8:9898892..9899783-chr8:10131113..10132044,4	K562	blood:
21	chr8:9803809..9806790-chr8:9814739..9816727,2	K562	blood:
22	chr8:9903797..9904391-chr8:22224073..22224947,2	HCT-116	colon:
23	chr8:9898835..9899700-chr8:10131105..10131973,4	MCF-7	breast:
24	chr8:9903435..9909004-chr8:9909616..9914452,5	K562	blood:
25	chr8:9803039..9805546-chr8:9809803..9812661,2	K562	blood:
26	chr8:9823483..9825109-chr8:9827263..9829750,2	K562	blood:
27	chr8:9839190..9841149-chr8:9843519..9845588,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP1L1-4	chr8:9895361-9895841	XLOC_007003

No data

Variant related genes	Relation type
ENSG00000104635	chromatin interactions
ENSG00000260093	chromatin interactions
ENSG00000175806	chromatin interactions
PTP4A1	miRNA target sites

Extended variants
information (count: 3441 )
Associated
traits (count: 137 )

Variant overlapped rSNPs/rCNVs (count:3441 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545999167	chr8:9798120-9798121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562587663	chr8:9798142-9798143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377134244	chr8:9798144-9798145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs531624290	chr8:9798163-9798164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556144383	chr8:9798171-9798172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147433539	chr8:9798187-9798188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534981058	chr8:9798234-9798235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs10481450	chr8:9798246-9798247	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs181361340	chr8:9798266-9798267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs61573224	chr8:9798274-9798275	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs558033220	chr8:9798298-9798299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113716989	chr8:9798362-9798363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs532911283	chr8:9798404-9798405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs74348162	chr8:9798415-9798416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569362356	chr8:9798416-9798417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs56357738	chr8:9798423-9798424	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs79173895	chr8:9798427-9798428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs554983706	chr8:9798463-9798464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568406278	chr8:9798468-9798469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538638133	chr8:9798490-9798491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185251475	chr8:9798528-9798529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs577914741	chr8:9798531-9798532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs554234020	chr8:9798558-9798559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs577412900	chr8:9798574-9798575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546360072	chr8:9798592-9798593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553635071	chr8:9798602-9798603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556282226	chr8:9798627-9798628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs190645339	chr8:9798651-9798652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542074268	chr8:9798654-9798655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561820053	chr8:9798666-9798667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527609076	chr8:9798704-9798705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540622067	chr8:9798719-9798720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78737850	chr8:9798756-9798757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs540490991	chr8:9798771-9798772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532826241	chr8:9798788-9798789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs549616482	chr8:9798789-9798790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377765058	chr8:9798820-9798821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531824936	chr8:9798824-9798825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs77887326	chr8:9798827-9798828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs534544419	chr8:9798845-9798846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547802374	chr8:9798880-9798881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113150802	chr8:9798882-9798883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188591828	chr8:9798901-9798902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145347840	chr8:9798911-9798912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs539893608	chr8:9798912-9798913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556399185	chr8:9798934-9798935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs199960223	chr8:9798935-9798936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs192337843	chr8:9798940-9798941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535272405	chr8:9798981-9798982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555585000	chr8:9799022-9799023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:137)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Osteosarcoma	21215367	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:199 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9791800-9801800	Weak transcription	Fetal Brain Male	brain
2	chr8:9801800-9803800	Enhancers	Fetal Brain Male	brain
3	chr8:9803800-9805400	Weak transcription	Fetal Brain Male	brain
4	chr8:9805400-9805600	Enhancers	Fetal Brain Male	brain
5	chr8:9807200-9807800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:9807400-9807800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:9815600-9815800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:9815600-9815800	Enhancers	Fetal Brain Male	brain
9	chr8:9815600-9816000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:9815800-9818800	Weak transcription	Fetal Brain Male	brain
11	chr8:9818800-9819400	Enhancers	Fetal Brain Male	brain
12	chr8:9819000-9819200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:9819000-9819400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:9819200-9820400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:9819400-9819800	Weak transcription	Fetal Brain Male	brain
16	chr8:9819400-9820800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:9819800-9822400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:9819800-9822800	Enhancers	Fetal Brain Male	brain
19	chr8:9819800-9823000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:9820000-9820800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:9820000-9820800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:9820000-9822400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:9820000-9823000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr8:9820200-9820400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr8:9820200-9820400	Enhancers	Fetal Brain Female	brain
26	chr8:9820200-9820800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr8:9820200-9821000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:9820200-9821000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:9820200-9822000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:9820400-9820600	Flanking Active TSS	Fetal Brain Female	brain
31	chr8:9820400-9820800	Enhancers	Brain Germinal Matrix	brain
32	chr8:9820400-9820800	Enhancers	Brain Hippocampus Middle	brain
33	chr8:9820400-9821000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:9820400-9821800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr8:9820400-9821800	Enhancers	Brain Substantia Nigra	brain
36	chr8:9820400-9822400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:9820600-9821000	Active TSS	Fetal Brain Female	brain
38	chr8:9820600-9821800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:9820600-9821800	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr8:9820600-9822000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:9820600-9822400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr8:9820800-9821000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:9820800-9821000	Bivalent Enhancer	GM12878-XiMat	blood
44	chr8:9820800-9821400	Enhancers	Brain Cingulate Gyrus	brain
45	chr8:9820800-9821600	Flanking Active TSS	Brain Germinal Matrix	brain
46	chr8:9820800-9821800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr8:9820800-9821800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr8:9820800-9821800	Active TSS	Brain Anterior Caudate	brain
49	chr8:9820800-9821800	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr8:9820800-9822000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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