Variant report

Variant	nsv1025920
Chromosome Location	chr5:61424594-61471782
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr5:61429174-61429235	GM12878	blood:	n/a	n/a
2	CEBPB	chr5:61469388-61469410	H1-hESC	embryonic stem cell:	n/a	n/a
3	CEBPB	chr5:61469329-61469562	HepG2	liver:	n/a	chr5:61469407-61469418
4	CEBPB	chr5:61435638-61435838	HepG2	liver:	n/a	chr5:61435701-61435712
5	CEBPB	chr5:61425946-61426306	IMR90	lung:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
6	CEBPB	chr5:61425964-61426295	Hela-S3	cervix:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
7	CEBPB	chr5:61426019-61426298	ECC-1	luminal epithelium:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
8	CEBPB	chr5:61425930-61426413	A549	lung:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
9	CEBPB	chr5:61425966-61426192	K562	blood:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
10	CEBPB	chr5:61425994-61426355	A549	lung:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
11	CEBPB	chr5:61425935-61426316	K562	blood:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
12	CEBPB	chr5:61425945-61426315	A549	lung:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
13	CEBPB	chr5:61466469-61466739	IMR90	lung:	n/a	n/a
14	CEBPB	chr5:61434610-61434737	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr5:61425968-61426306	H1-hESC	embryonic stem cell:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
16	CEBPB	chr5:61428083-61428425	Hela-S3	cervix:	n/a	chr5:61428233-61428244 chr5:61428231-61428244
17	CEBPB	chr5:61425945-61426327	ECC-1	luminal epithelium:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
18	CEBPB	chr5:61466571-61466632	K562	blood:	n/a	n/a
19	CEBPB	chr5:61459905-61460138	K562	blood:	n/a	n/a
20	CEBPB	chr5:61425913-61426319	MCF-7	breast:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
21	CEBPB	chr5:61426038-61426233	MCF-7	breast:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
22	CEBPB	chr5:61425949-61426306	HepG2	liver:	n/a	chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131 chr5:61426122-61426131
23	CEBPB	chr5:61435688-61435816	K562	blood:	n/a	chr5:61435701-61435712
24	CEBPB	chr5:61465307-61465380	HepG2	liver:	n/a	chr5:61465317-61465328
25	CTCF	chr5:61439500-61439650	RPTEC	kidney:	n/a	n/a
26	CTCF	chr5:61439620-61439770	AG09309	skin:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
27	CTCF	chr5:61439580-61439730	GM12865	blood:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
28	CTCF	chr5:61454121-61454160	Kidney_OC	kidney:	n/a	n/a
29	CTCF	chr5:61439560-61439710	HVMF	connective:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
30	CTCF	chr5:61439580-61439730	AG09319	gingival:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
31	CTCF	chr5:61439540-61439690	BJ	skin:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
32	CTCF	chr5:61439559-61439758	GM10266	blood:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
33	CTCF	chr5:61439580-61439730	WERI-Rb-1	eye:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
34	CTCF	chr5:61439640-61439790	HVMF	connective:	n/a	chr5:61439644-61439660 chr5:61439643-61439661
35	CTCF	chr5:61439540-61439690	HA-sp	spinal cord:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
36	CTCF	chr5:61439524-61439779	LNCaP	prostate:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
37	CTCF	chr5:61439620-61439770	HCM	heart:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
38	CTCF	chr5:61440220-61440370	AG09309	skin:	n/a	n/a
39	CTCF	chr5:61439620-61439770	AG04450	lung:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
40	CTCF	chr5:61439580-61439730	AG10803	skin:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
41	CTCF	chr5:61439560-61439710	AG04450	lung:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
42	CTCF	chr5:61430860-61431010	AG09309	skin:	n/a	n/a
43	CTCF	chr5:61439880-61440030	HEK293	kidney:	n/a	n/a
44	CTCF	chr5:61454712-61454800	K562	blood:	n/a	n/a
45	CTCF	chr5:61439540-61439690	GM12875	blood:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
46	CTCF	chr5:61439455-61439769	HepG2	liver:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
47	CTCF	chr5:61439600-61439750	GM12874	blood:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659
48	CTCF	chr5:61439840-61439990	HUVEC	blood vessel:	n/a	n/a
49	CTCF	chr5:61430800-61430950	HEEpiC	esophagus:	n/a	n/a
50	CTCF	chr5:61439600-61439750	WI-38	lung:	n/a	chr5:61439644-61439660 chr5:61439643-61439661 chr5:61439638-61439659

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:61433576-61433626	BE2_C	brain:	n/a
2	chr5:61433576-61433626	LNCaP	prostate:	n/a
3	chr5:61439790-61439840	GM06990	blood:	n/a
4	chr5:61433576-61433626	HCF	heart:	n/a
5	chr5:61439790-61439840	HCM	heart:	n/a
6	chr5:61439790-61439840	A549	lung:	n/a
7	chr5:61433576-61433626	H1-hESC	embryonic stem cell:	embryo
8	chr5:61439790-61439840	HRCEpiC	kidney:	n/a
9	chr5:61433576-61433626	MCF-7	breast:	n/a
10	chr5:61433576-61433626	HL-60	blood:	n/a
11	chr5:61433576-61433626	HRPEpiC	eye:	n/a
12	chr5:61439790-61439840	PFSK-1	brain:	n/a
13	chr5:61439790-61439840	BE2_C	brain:	n/a
14	chr5:61439790-61439840	BJ	skin:	n/a
15	chr5:61433576-61433626	NHBE	bronchial:	n/a
16	chr5:61439790-61439840	NB4	blood:	n/a
17	chr5:61433576-61433626	HPAEpiC	pulmonary alveolar:	n/a
18	chr5:61433576-61433626	ProgFib	skin:	n/a
19	chr5:61433576-61433626	PANC-1	pancreas:	n/a
20	chr5:61433576-61433626	HCM	heart:	n/a
21	chr5:61433576-61433626	SK-N-SH	brain:	n/a
22	chr5:61439790-61439840	GM12878	blood:	n/a
23	chr5:61433576-61433626	MCF10A-Er-Src	breast:	n/a
24	chr5:61433576-61433626	HAEpiC	amniotic membrane:	n/a
25	chr5:61439790-61439840	AG09319	gingival:	n/a
26	chr5:61439790-61439840	SK-N-SH	brain:	n/a
27	chr5:61433576-61433626	HRCEpiC	kidney:	n/a
28	chr5:61439790-61439840	PANC-1	pancreas:	n/a
29	chr5:61433576-61433626	NH-A	brain:	n/a
30	chr5:61439790-61439840	K562	blood:	n/a
31	chr5:61433576-61433626	GM12878	blood:	n/a
32	chr5:61433576-61433626	HNPCEpiC	eye:	n/a
33	chr5:61433576-61433626	SK-N-SH_RA	brain:	n/a
34	chr5:61439790-61439840	MCF-7	breast:	n/a
35	chr5:61439790-61439840	T-47D	breast:	n/a
36	chr5:61433576-61433626	ovcar-3	ovarian:	n/a
37	chr5:61433576-61433626	Hela-S3	cervix:	n/a
38	chr5:61439790-61439840	U87	brain:	n/a
39	chr5:61439790-61439840	IMR90	lung:	fetal
40	chr5:61433576-61433626	AG09319	gingival:	n/a
41	chr5:61433576-61433626	AG04450	lung:	fetal
42	chr5:61433576-61433626	HCPEpiC	choroid plexus:	n/a
43	chr5:61439790-61439840	Hela-S3	cervix:	n/a
44	chr5:61439790-61439840	SK-N-SH_RA	brain:	n/a
45	chr5:61439790-61439840	GM12891	blood:	n/a
46	chr5:61439790-61439840	PrEC	prostate:	n/a
47	chr5:61433576-61433626	HMEC	breast:	n/a
48	chr5:61439790-61439840	CMK	blood:	n/a
49	chr5:61439790-61439840	HIPEpiC	eye:	n/a
50	chr5:61439790-61439840	RPTEC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:61424317..61428011-chr5:61428590..61430862,3	K562	blood:
2	chr5:61426729..61428623-chr5:61433121..61435714,2	K562	blood:
3	chr1:190820569..190821089-chr5:61468212..61468732,2	MCF-7	breast:
4	chr5:61471386..61473482-chr5:61474946..61477299,2	MCF-7	breast:
5	chr5:61442438..61445370-chr5:61445571..61447544,2	MCF-7	breast:
6	chr12:125398291..125400539-chr5:61461576..61463918,2	MCF-7	breast:
7	chr5:61439485..61439993-chr5:61501806..61502567,2	MCF-7	breast:
8	chr5:61437415..61439852-chr5:61446212..61449062,2	K562	blood:
9	chr5:61437415..61439852-chr5:61446212..61449062,2	K562	blood:
10	chr5:61426729..61428623-chr5:61433121..61435714,2	K562	blood:
11	chr5:61229619..61230608-chr5:61439489..61440182,2	MCF-7	breast:
12	chr5:61008135..61009057-chr5:61470844..61471443,2	K562	blood:
13	chr5:61422681..61424219-chr5:61436524..61438145,2	MCF-7	breast:
14	chr5:61424317..61428011-chr5:61428590..61430862,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIF2A-2	chr5:61442492-61442773	NONHSAT101705

Variant related genes	Relation type
RN7SKP157	TF binding region
RN7SKP157	CpG island
ENSG00000251983	chromatin interactions
ENSG00000265345	chromatin interactions
ENSG00000150991	chromatin interactions

Extended variants
information (count: 889 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:889 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552139292	chr5:61424598-61424599	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs571919535	chr5:61424600-61424601	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs143376395	chr5:61424665-61424666	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs565813719	chr5:61424697-61424698	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs147326429	chr5:61424747-61424748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs191658572	chr5:61427200-61427201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs560353181	chr5:61427290-61427291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs137961959	chr5:61427293-61427294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs183564522	chr5:61427317-61427318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs564643176	chr5:61427334-61427335	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs1508894	chr5:61427338-61427339	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs547120934	chr5:61427345-61427346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs79951848	chr5:61427350-61427351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs188000100	chr5:61427407-61427408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192828880	chr5:61427504-61427505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570229623	chr5:61427552-61427553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs78180771	chr5:61427584-61427585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183931441	chr5:61427601-61427602	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186770412	chr5:61427655-61427656	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116894629	chr5:61427660-61427661	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554710447	chr5:61427687-61427688	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573856476	chr5:61427701-61427702	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551938042	chr5:61427735-61427736	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs143440347	chr5:61427791-61427792	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570547581	chr5:61427816-61427817	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75281937	chr5:61427840-61427841	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs544815124	chr5:61427847-61427848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147131033	chr5:61427857-61427858	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs531173327	chr5:61427864-61427865	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192604541	chr5:61427882-61427883	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547349252	chr5:61427902-61427903	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560757550	chr5:61427928-61427929	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140278656	chr5:61427945-61427946	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141589841	chr5:61427946-61427947	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs116693389	chr5:61427961-61427962	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112403767	chr5:61427970-61427971	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs150903306	chr5:61428003-61428004	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs114065431	chr5:61428028-61428029	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs139378573	chr5:61428080-61428081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs1423127	chr5:61428137-61428138	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs75697640	chr5:61428150-61428151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568327803	chr5:61428180-61428181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs537457677	chr5:61428208-61428209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs150025687	chr5:61428252-61428253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs575973638	chr5:61428257-61428258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs184848312	chr5:61428258-61428259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs190495109	chr5:61428275-61428276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs181802253	chr5:61428278-61428279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs540735635	chr5:61428287-61428288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs138058867	chr5:61428377-61428378	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Renal cell carcinoma	18194544	CNVD
abnormal development	18461090	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Neuroticism	17667963	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:243 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61424000-61424600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr5:61424000-61424800	Enhancers	Brain Substantia Nigra	brain
3	chr5:61427200-61427400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:61427400-61428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:61427600-61428800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:61427800-61428200	Enhancers	Osteobl	bone
7	chr5:61427800-61428400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:61427800-61428800	Enhancers	HMEC	breast
9	chr5:61427800-61429000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:61428000-61428400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:61428200-61429000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:61428200-61429200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:61428400-61428800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:61428800-61429000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:61428800-61430600	Weak transcription	HMEC	breast
16	chr5:61429000-61430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:61429200-61430200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:61430400-61430600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:61430400-61431000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:61430600-61431200	Enhancers	HMEC	breast
21	chr5:61430800-61431200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:61432400-61433200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:61432600-61432800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr5:61432600-61433200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr5:61432600-61433400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:61432600-61433600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:61432800-61433000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr5:61432800-61433000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:61432800-61433000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:61432800-61433200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:61432800-61433200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr5:61432800-61433200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr5:61432800-61434400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:61433000-61433200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr5:61433000-61433200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:61433000-61434200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:61433000-61434400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:61433200-61433400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:61433200-61434200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr5:61433200-61434200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:61433200-61434400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr5:61433200-61434400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:61433200-61434400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:61433200-61434400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr5:61433200-61434800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr5:61433400-61433800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:61433400-61434000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:61433600-61434000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:61433800-61435200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr5:61434000-61434600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links